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. 2020 May 19;7:81. doi: 10.3389/fmolb.2020.00081
Reagent or resource Source Identifier
BACTERIAL STRAINS
E. coli BL21DE3 cells Gift from Dr. M. Seeliger (SUNY, Stony Brook) N/A
Src kinase purification, assays, and crystal structure
pET28a Src kinase expression vector Gift from Dr. M. Seeliger (SUNY, Stony Brook) N/A
Custom oligos:AAGCTGGGGCAGGGCAGCTTTGGAGAGGTCTGG Sigma-Aldrich N/A
QuikChange II Site-Directed Mutagenesis Kit Agilent Technologies Cat # 200524
Kanamycin Sigma-Aldrich Cat # K1377
Streptomycin Sigma-Aldrich Cat # S9137
Chloramphenicol Sigma-Aldrich Cat # C0378
Bosutinib Sigma-Aldrich Cat # PZ0192
SM1-71 Prof. Nathanael Gray, DFCI, Harvard https://graylab.dana-farber.org/
DGY-06-116 Prof. Nathanael Gray, DFCI, Harvard https://graylab.dana-farber.org/
NJH-01-111 Prof. Nathanael Gray, DFCI, Harvard https://graylab.dana-farber.org/
LabChip® EZ Reader automated microcapillary electrophoresis platform PerkinElmer https://www.perkinelmer.com/product/assy-ez-reader-ii-ship-level-122919
Fluorescently labeled peptide-4 substrate Perkin Elmer https://www.perkinelmer.com/product/dkp-peptide-4-packed-760348
EZ-Link™ Sulfo-NHS-Biotinylation Kit ThermoFisher Cat # 21425
Biacore S200 GE Healthcare https://www.gelifesciences.com/en/us/shop/protein-analysis/spr-label-free-analysis/systems/biacore-s200-p-05541
Biotin Capture Kit and Sensor Chip CAP GE Healthcare Cat # 28920233
Deposited data
Src-DGY-06-116 https://www.rcsb.org (this study) PDB ID: 6E6E
SOFTWARE AND ALGORITHMS
EZReader 3.0 software Perkin Elmer https://www.perkinelmer.com/lab-products-and-services/resources/software-downloads.html
GraphPad software version 7 GraphPad Software www.graphpad.com
HKL3000 (Minor et al., 2006) https://sbgrid.org/
PHENIX 1.14rc3_319 (Adams et al., 2010) https://sbgrid.org/
Coot Emsley and Cowtan, 2004 https://sbgrid.org/
CCP4 7.0 Winn et al., 2011 https://sbgrid.org/
Pymol 2.3 Schrodinger, LLC https://sbgrid.org/
LIGPLOT Laskowski R A, Swindells M B (2011) https://www.ebi.ac.uk/thornton-srv/software/LigPlus/
Biacore™ insight evaluation software GE Healthcare Life Sciences, USA. https://www.gelifesciences.com/en/us/shop/protein-analysis/spr-label-free-analysis/systems/biacore-s200-p-05541