BACTERIAL STRAINS |
E. coli BL21DE3 cells |
Gift from Dr. M. Seeliger (SUNY, Stony Brook) |
N/A |
Src kinase purification, assays, and crystal structure |
|
|
pET28a Src kinase expression vector |
Gift from Dr. M. Seeliger (SUNY, Stony Brook) |
N/A |
Custom oligos:AAGCTGGGGCAGGGCAGCTTTGGAGAGGTCTGG |
Sigma-Aldrich |
N/A |
QuikChange II Site-Directed Mutagenesis Kit |
Agilent Technologies |
Cat # 200524 |
Kanamycin |
Sigma-Aldrich |
Cat # K1377 |
Streptomycin |
Sigma-Aldrich |
Cat # S9137 |
Chloramphenicol |
Sigma-Aldrich |
Cat # C0378 |
Bosutinib |
Sigma-Aldrich |
Cat # PZ0192 |
SM1-71 |
Prof. Nathanael Gray, DFCI, Harvard |
https://graylab.dana-farber.org/ |
DGY-06-116 |
Prof. Nathanael Gray, DFCI, Harvard |
https://graylab.dana-farber.org/ |
NJH-01-111 |
Prof. Nathanael Gray, DFCI, Harvard |
https://graylab.dana-farber.org/ |
LabChip® EZ Reader automated microcapillary electrophoresis platform |
PerkinElmer |
https://www.perkinelmer.com/product/assy-ez-reader-ii-ship-level-122919 |
Fluorescently labeled peptide-4 substrate |
Perkin Elmer |
https://www.perkinelmer.com/product/dkp-peptide-4-packed-760348 |
EZ-Link™ Sulfo-NHS-Biotinylation Kit |
ThermoFisher |
Cat # 21425 |
Biacore S200 |
GE Healthcare |
https://www.gelifesciences.com/en/us/shop/protein-analysis/spr-label-free-analysis/systems/biacore-s200-p-05541 |
Biotin Capture Kit and Sensor Chip CAP |
GE Healthcare |
Cat # 28920233 |
Deposited data |
|
|
Src-DGY-06-116 |
https://www.rcsb.org (this study) |
PDB ID: 6E6E |
SOFTWARE AND ALGORITHMS |
EZReader 3.0 software |
Perkin Elmer |
https://www.perkinelmer.com/lab-products-and-services/resources/software-downloads.html |
GraphPad software version 7 |
GraphPad Software |
www.graphpad.com |
HKL3000 |
(Minor et al., 2006) |
https://sbgrid.org/ |
PHENIX 1.14rc3_319 |
(Adams et al., 2010) |
https://sbgrid.org/ |
Coot |
Emsley and Cowtan, 2004
|
https://sbgrid.org/ |
CCP4 7.0 |
Winn et al., 2011
|
https://sbgrid.org/ |
Pymol 2.3 |
Schrodinger, LLC |
https://sbgrid.org/ |
LIGPLOT |
Laskowski R A, Swindells M B (2011) |
https://www.ebi.ac.uk/thornton-srv/software/LigPlus/ |
Biacore™ insight evaluation software |
GE Healthcare Life Sciences, USA. |
https://www.gelifesciences.com/en/us/shop/protein-analysis/spr-label-free-analysis/systems/biacore-s200-p-05541 |