Table 3.
List of rRNA genes used in phylogenetic analysis of chytrids. New GenBank numbers are in bold.
| Species | Culture Number |
GenBank accession no. |
||
|---|---|---|---|---|
| 18S | 5.8S | 28S | ||
| Outgroup (Cryptomycota) | ||||
| Rozella allomycis | BK47-054 | AY635838 | AY997087 | DQ273803 |
| Rozella sp. | JEL347 | AY601707 | AY997086 | DQ273766 |
| Blastocladiomycota | ||||
| Allomyces arbusculus | Brazil2 | AY552524 | AY997028 | DQ273806 |
| Blastocladiella emersonii | BK49-1 | AY635842 | AY997032 | DQ273808 |
| Catenophlyctis variabilis | JEL298 | AY635822 | AY997034 | DQ273780 |
| Neocallimastigomycota | ||||
| Cyllamyces aberensis | EO14 | DQ536481 | AY997042 | DQ273829 |
| Neocallimastix sp. | GE13 | DQ322625 | AY997064 | DQ273822 |
| Orpinomyces sp. | OUS1 | AJ864616 | AJ864475 | AJ864475 |
| Chytridiomycota | ||||
| Monoblepharidomycetes | ||||
| Gonapodya sp. | JEL183 | AH009066 | AY349112 | KJ668088 |
| Hyaloraphidium curvatum | SAG235-1 | Y17504 | AY997055 | DQ273771 |
| Monoblepharella mexicana | BK78-1 | AF164337 | AY997061 | DQ273777 |
| Oedogoniomyces sp. | CR84 | AY635839 | AY997066 | DQ273804 |
| Chytridiomycetes | ||||
| Chytridiales | ||||
| Chytriomyces hyalinus | MP4 | DQ536487 | DQ536499 | DQ273836 |
| Dendrochytridium crassum | JEL354 | AY635827 | AY997083 | DQ273785 |
| Phlyctochytrium planicorne | JEL47 | DQ536473 | AY997070 | DQ273813 |
| Rhizoclosmatium sp. | JEL347-h | AY601709 | AY997076 | DQ273769 |
| Cladochytriales | ||||
| Endochytrium sp. | JEL324 | AY635844 | AY997044 | DQ273816 |
| Cladochytrium replicatum | JEL180 | AY546683 | AY997037 | AY546688 |
| Cladochytriales sp. | JEL72 | AH009044 | AY349109 | AY349083 |
| Nowakowskiella sp. | JEL127 | AY635835 | AY997065 | DQ273798 |
| Gromochytriales | ||||
| Gromochytrium mamkaevae | CALU_X-51 | KF586842 | KF586842 | KF586842 |
| kor_110904_17 | Uncultured | FJ157331 | — | — |
| Lobulomycetales | ||||
| Clydaea vesicula | PL70 | EF443138 | EU352774 | EF443143 |
| Lobulomyces angularis | JEL45 | AF164253 | AY997036 | DQ273815 |
| Lobulomyces poculatus | JEL343 | EF443134 | EU352770 | EF443139 |
| Maunachytrium keaense | AF021 | EF432822 | EF432822 | EF432822 |
| Mesochytriales | ||||
| Mesochytrium penetrans | CALU_X-10 | FJ804149 | — | FJ804153 |
| PFF5SP2005 | Uncultured | EU162641 | — | — |
| T2P1AeB05 | Uncultured | GQ995415 | — | — |
| Polychytriales | ||||
| Arkaya lepida | JEL93 | AF164278 | AY997056 | DQ273814 |
| Karlingiomyces asterocystis | JEL572 | HQ901769 | — | HQ901708 |
| Lacustromyces hiemalis | JEL31 | AH009039 | — | HQ901700 |
| Polychytrium aggregatum | JEL109 | AY601711 | AY997074 | AY546686 |
| Rhizophlyctidales | ||||
| Rhizophlyctis rosea | JEL318 | AY635829 | AY997078 | DQ273787 |
| BK47-07 | AH009028 | — | — | |
| BK57-5 | AH009027 | — | — | |
| Rhizophydiales | ||||
| Boothiomyces macroporosus | PLAUS21 | DQ322622 | AY997084 | DQ273823 |
| Kappamyces laurelensis | PL98 | DQ536478 | DQ536494 | DQ273824 |
| Rhizophydium brooksianum | JEL136 | AY601710 | AY997079 | DQ273770 |
| Uebelmesseromyces harderi | JEL171 | AF164272 | AY997077 | DQ273775 |
| Spizellomycetales | ||||
| Brevicalcar kilaueaense | JEL355 | DQ536477 | AY997093 | DQ273821 |
| Gaertneriomyces semiglobiferus | BK91-10 | AF164247 | AY997051 | DQ273778 |
| Spizellomyces punctatus | ATCC48900 | AY546684 | AY997092 | AY546692 |
| Thoreauomyces humboldtii | JEL95 | AF164245 | AY997075 | DQ273776 |
| Synchytriales | ||||
| Synchytrium decipiens | DUH0009362 | DQ536475 | AY997094 | DQ273819 |
| Synchytrium endobioticum | P-58 | AJ784274 | — | — |
| Synchytrium macrosporum | DUH0009363 | DQ322623 | AY997095 | DQ273820 |
| Zygophlyctidales ord. nov. | ||||
| Zygophlyctis asterionellae | KS98 | LC176289 | LC176299 | LC176294 |
| Zygophlyctis melosirae | C1 | LC176287 | LC176297 | LC176292 |
| KS94 | LC176288 | LC176298 | LC176293 | |
| KS99 | LC176290 | LC176300 | LC176295 | |
| KS109 | LC482216 | LC482217 | LC482218 | |
| Zygophlyctis planktonica | SVdW-SYN-CHY1 | LC482219 | LC482220 | LC482221 |
| AY2009A5 | Uncultured | HQ219392 | HQ219392 | – |
| B86-172 | Uncultured | EF196796 | — | — |
| BiwaFcA1 | Uncultured | AB971229 | — | — |
| CH1_2B_29 | Uncultured | AY821989 | — | — |
| KRL02E73 | Uncultured | JN090912 | — | — |
| InbaSyA | Uncultured | AB971237 | — | — |
| PA2009D11 | Uncultured | HQ191415 | HQ191415 | — |
| PFH1AU2004 | Uncultured | DQ244009 | — | — |
| PG5.12 | Uncultured | AY642734 | — | — |
| Zygorhizidiales ord. nov. | ||||
| Zygorhizidium willei | KS97 | LC482213 | LC482214 | LC482215 |
| Novel Clade II sensuLefèvre et al. (2008) | ||||
| AY2009D3 | Uncultured | HQ219449 | HQ219449 | — |
| PA2009B8 | Uncultured | HQ191387 | HQ191387 | — |
| PA2009E8 | Uncultured | HQ191289 | HQ191289 | — |
| PFH9SP2005 | Uncultured | EU162642 | — | — |
| incertae sedis_1 | ||||
| Dangeardia mamillata | SVdW-EUD2 | MG605054 | — | MG605051 |
| E4e4731 | Uncultured | — | — | KF750554 |
| LLMB2_1 | Uncultured | — | — | JN049538 |
| P34.43 | Uncultured | AY642701 | — | — |
| incertae sedis_2 | ||||
| Rhizophydium scenedesmi | EPG01 | MF163176 | — | — |
| Elev_18S_563 | Uncultured | EF024210 | — | — |
| L73_ML_156 | Uncultured | FJ354068 | — | — |
| PFE7AU2004 | Uncultured | DQ244008 | — | — |