Table 2.
Overview and details used for phylogenetic analyses in sections of Penicillium and Talaromyces, and related taxa with taxonomic novelties proposed in the study.
| Penicillium | Talaromyces | Miscellaneous Aspergillaceae | ||||||
|---|---|---|---|---|---|---|---|---|
| Turbata and Paradoxa | Ramosa | Robsamsonia | Roquefortorum | Talaromyces | Trachyspermi | |||
| ITS dataset | Length (bp) | 504 | 485 | 428 | 506 | 360 | 474 | 440 |
| Pvar | 29 | 47 | 207 | 24 | 72 | 119 | 124 | |
| Pi | 18 | 16 | 18 | 13 | 45 | 86 | 104 | |
| Model* | K80+G | GTR+I | K80+G | TPM2uf+I | TrN+I+G | TIM2+I+G | TrN+I+G | |
| tub2 dataset | Length (bp) | 412 | 387 | 352 | 409 | 370 | 398 | 401 |
| Pvar | 151 | 112 | 122 | 68 | 178 | 158 | 223 | |
| Pi | 100 | 64 | 67 | 29 | 140 | 104 | 187 | |
| Model* | TIM2ef+G | TIM2ef+G | GTR+G | TIM1ef | HKY+I+G | TPM3uf+G | HKY+I+G | |
| CmdA dataset | Length (bp) | 492 | 544 | 486 | 501 | 475 | 482 | – |
| Pvar | 195 | 223 | 164 | 50 | 250 | 247 | – | |
| Pi | 88 | 92 | 96 | 8 | 205 | 176 | – | |
| Model* | TIM2+G | TIM2+G | GTR+I | TPM1+G | HKY+I+G | TPM1+I+G | – | |
| rpb2 dataset | Length (bp) | 915 | – | 804 | 915 | – | – | 956 |
| Pvar | 239 | – | 243 | 106 | – | – | 463 | |
| Pi | 159 | – | 127 | 55 | – | – | 375 | |
| Model* | TrN+I+G | – | GTR+I | TIM3ef+I | – | – | TrN+I+G | |
| Concatenated dataset | Length (bp) | 2323 | 1416 | 2068 | 2331 | 1205 | 1354 | 1797 |
| Pvar | 614 | 382 | 574 | 248 | 503 | 524 | 810 | |
| Pi | 365 | 172 | 303 | 105 | 395 | 366 | 666 | |
Pvar = variable sites; Pi = phylogenetic informative sites;
* = substitution model for Bayesian inference