Table 1.
Details of scores obtained for target proteins via RAMPAGE and Swiss-model servers.
| Proteins | Template used for homology modeling | Sequence identity (%) by Blast (protein seq. with template seq.) | Ramachandran score (% of residue) | GMQE score | RMSD (Å) | Ramachandran score after refinement (% of residue) |
|---|---|---|---|---|---|---|
| Helicase | 6jyt.2. A | 97.95 | 84.34 | 0.98 | 0.304 | 88.6 |
| Endoribonuclease | 2h85.1. A | 88.0 | 97.96 | 0.98 | 0.249 | 98.5 |
| Exoribonuclease | 5nfy.1. A | 94.07 | 89.44 | 0.98 | 0.258 | 93.1 |
| RNA-dependent RNA polymerase | 6nur.1. A | 96.24 | 97.5 | 0.83 | 0.228 | 98.1 |
| Methyltransferase | 2xyr.1. A | 92.57 | 96.18 | 0.97 | 0.252 | 96.2 |
| 3C-like proteinase | 2z9j.1.A | 96.0 | 96.51 | 0.99 | 0.269 | 96.4 |