Table 2.
Variance components for Smart Futures heifers for reproductive maturity score (RMS) estimated on the 800 K marker panel with standard errors
| GRM | Analysis | Vp (se) | Va (se) | Ve (se) | h2 (se) | WGS Va (se) | WGS h2 (se) | Total h2 (se) |
|---|---|---|---|---|---|---|---|---|
| SGRM | CONTROL | 1.11 (0.01) | 0.22 (0.01) | 0.89 (0.01) | 0.20 (0.01) | – | – | – |
| TOP GWAS | 1.11 (0.01) | 0.22 (0.01) | 0.89 (0.01) | 0.20 (0.01) | – | – | – | |
| TOP META | 1.11 (0.01) | 0.22 (0.01) | 0.89 (0.01) | 0.20 (0.01) | – | – | – | |
| COJO GWAS 100 | 1.11 (0.01) | 0.22 (0.01) | 0.89 (0.01) | 0.20 (0.01) | – | – | – | |
| COJO GWAS 250 | 1.11 (0.01) | 0.22 (0.01) | 0.89 (0.01) | 0.20 (0.01) | – | – | – | |
| GWAS COJO CHR | 1.11 (0.01) | 0.22 (0.01) | 0.89 (0.01) | 0.20 (0.01) | – | – | – | |
| COJO META 100 | 1.11 (0.01) | 0.22 (0.01) | 0.89 (0.01) | 0.20 (0.01) | – | – | – | |
| COJO META 250 | 1.11 (0.01) | 0.22 (0.01) | 0.89 (0.01) | 0.20 (0.01) | – | – | – | |
| META COJO CHR | 1.11 (0.01) | 0.22 (0.01) | 0.89 (0.01) | 0.20 (0.01) | – | – | – | |
| MGRM | TOP GWAS | 1.11 (0.00) | 0.20 (0.01) | 0.90 (0.02) | 0.18 (0.01) | 0.012 (0.002) | 0.012 (0.002) | 0.19 (0.011) |
| TOP META | 1.13 (0.01) | 0.19 (0.01) | 0.90 (0.01) | 0.17 (0.01) | 0.042 (0.007) | 0.036 (0.008) | 0.21 (0.012) | |
| COJO GWAS 100 | 1.11 (0.01) | 0.20 (0.01) | 0.89 (0.01) | 0.18 (0.01) | 0.010 (0.000) | 0.012 (0.002) | 0.20 (0.010) | |
| COJO GWAS 250 | 1.11 (0.01) | 0.19 (0.01) | 0.89 (0.01) | 0.17 (0.01) | 0.028 (0.007) | 0.024 (0.005) | 0.20 (0.010) | |
| GWAS COJO CHR | 1.11 (0.01) | 0.20 (0.01) | 0.89 (0.01) | 0.18 (0.01) | 0.014 (0.007) | 0.010 (0.006) | 0.20 (0.010) | |
| COJO META 100 | 1.11 (0.01) | 0.20 (0.01) | 0.89 (0.01) | 0.18 (0.01) | 0.022 (0.002) | 0.018 (0.002) | 0.20 (0.012) | |
| COJO META 250 | 1.11 (0.01) | 0.18 (0.01) | 0.89 (0.01) | 0.16 (0.01) | 0.034 (0.002) | 0.032 (0.002) | 0.20 (0.011) | |
| META COJO CHR | 1.10 (0.00) | 0.20 (0.01) | 0.90 (0.01) | 0.18 (0.01) | 0.016 (0.002) | 0.012 (0.002) | 0.19 (0.010) | |
| BAYES | CONTROL | 1.09 (0.00) | 0.19 (0.01) | 0.90 (0.01) | 0.17 (0.01) | – | – | – |
| TOP GWAS | 1.09 (0.00) | 0.19 (0.01) | 0.90 (0.01) | 0.17 (0.01) | – | – | – | |
| TOP META | 1.09 (0.00) | 0.19 (0.01) | 0.90 (0.01) | 0.17 (0.01) | – | – | – | |
| COJO GWAS 100 | 1.09 (0.00) | 0.19 (0.01) | 0.90 (0.01) | 0.17 (0.01) | – | – | – | |
| COJO GWAS 250 | 1.09 (0.00) | 0.19 (0.01) | 0.90 (0.01) | 0.17 (0.01) | – | – | – | |
| GWAS COJO CHR | 1.09 (0.00) | 0.19 (0.01) | 0.90 (0.01) | 0.17 (0.01) | – | – | – | |
| COJO META 100 | 1.09 (0.00) | 0.19 (0.01) | 0.90 (0.01) | 0.17 (0.01) | – | – | – | |
| COJO META 250 | 1.09 (0.00) | 0.18 (0.01) | 0.90 (0.01) | 0.17 (0.01) | – | – | – | |
| META COJO CHR | 1.09 (0.00) | 0.18 (0.01) | 0.90 (0.01) | 0.17 (0.01) | – | – | – |
Estimated phenotypic variance (Vp), additive variance (Va), environmental variance (Ve) and heritability (h2) estimated for single GRM (SGRM), Bayes R (BAYES) analyses and multi-GRM (MGRM) analyses. Whole-genome sequence (WGS) variants additive variance (WGS Va), WGS variants heritability (WGS h2) and total heritability (total h2) estimated in the multiple genomic relationship matrix (MGRM) analyses in the Smart Futures heifers 800 K marker panel (standard errors (se) in parentheses)