Table 1.
Hexapeptides of immunologic relevance shared between SARS-CoV-2 and proteins related to the preBötC. The experimentally validated immunogenic epitopes containing the shared motifs are presented in the last column.
Shared 6-mer | SARS-CoV-2 protein | Human protein [UniProt-ID] | Epitopes [IEDB-ID; Protein; Organism] |
---|---|---|---|
GSQASS | nucleocapsid phosphoprotein |
DAB1 Disabled homolog 1 [O75553] |
PKGFYAEGSRGGSQASSR [48067; Nucleoprotein; SARS-CoV] SRGGSQASSRSSSRSR [60669; Nucleoprotein; SARS-CoV] |
LNEVAK | surface glycoprotein |
AIFM1 Apoptosis-inducing factor 1, mitochondrial [O95831] |
RLNEVAKNL [54680; Spike glycoprotein; SARS-CoV] EIDRLNEVAKNLNESLIDLQELGKYEQY + ACET(E1) [12426; Spike glycoprotein; SARS-CoV] EIDRLNEVAKNLNESLIDLQELGKYEQY [558417; Spike glycoprotein; SARS-CoV] |
SAAEAS | nucleocapsid phosphoprotein |
SURF1 Surfeit locus protein 1 [Q15526] |
KKSAAEASKKPRQKRTA [31692; Nucleoprotein; SARS-CoV] KKSAAEASKKPRQKRTATKQYNVTQ [31693; Nucleoprotein; SARS-CoV] QQQGQTVTKKSAAEASKK [52117; Nucleoprotein; SARS-CoV] |