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. 2020 May 19;5(3):e00002-20. doi: 10.1128/mSystems.00002-20

TABLE 1.

Mesor, amplitude, and acrophase of mRNA levels of clock genes in the livers of control, HFD, and MelHF micea

Gene Group Acrophase (h) Mesor Amplitude P value
Clock Cont 0.59 0.61 0.21 <0.01
HFD ns
MelHF 6.57 0.41 0.16 <0.05
Cry1 Cont 1.90 0.85 0.37 <0.01
HFD 1.12 0.82 0.27 <0.01
MelHF 0.54 0.71 0.27 <0.01
Cry2 Cont 20.42 0.97 0.56 <0.01
HFD 20.63 0.83 0.40 <0.01
MelHF 17.84 0.64 0.30 <0.01
Per1 Cont 19.60 2.88 4.20 <0.01
HFD 19.30 2.44 3.30 <0.01
MelHF 18.38 1.90 2.37 <0.01
Per2 Cont 22.27 0.60 0.5 <0.01
HFD 21.91 0.44 0.38 <0.01
MelHF 20.89 0.30 0.25 <0.01
a

The rhythmicity was assessed by cosinor analysis, and P < 0.05 indicated a significant rhythm; ns means the difference was nonsignificant (P > 0.05). The model can be written according to the equation f(x) = A + B cos [2 π(x + C)/24], with f(x) indicating relative expression levels of target genes, x indicating the time of sampling (h), A indicating the mean value of the cosine curve (midline estimating statistic of rhythm [mesor]), B indicating the amplitude of the curve (half of the sinusoid), and C indicating the acrophase (h).