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. 2020 May 19;5(3):e00148-20. doi: 10.1128/mSystems.00148-20

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Copyright © 2020 Osei Sekyere et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

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FIG 3 — Global phylogenomics of Citrobacter freundii strains obtained from PATRIC/GenBank (A and B). The relationships of the two C. freundii strains, CF003 and CF004 (shown in blue-colored text labels), to all C. freundii genomes deposited in GenBank and PATRIC were analyzed and drawn into two trees. (A) Genomes belonging to the same subclade with the closest evolutionary distance are indicated in red-colored text labels, while isolates from South Africa are indicated in green-colored text labels. (B) The various phylogenetic clades and subclades are highlighted together and uniquely to show their evolution and epidemiology. The trees were drawn using the maximum-likelihood method in RAxML, using Streptomyces sp. strain MUSC164 as a reference. Bootstrap values are shown on the branches.

FIG 3 — Global phylogenomics of Citrobacter freundii strains obtained from PATRIC/GenBank (A and B). The relationships of the two C. freundii strains, CF003 and CF004 (shown in blue-colored text labels), to all C. freundii genomes deposited in GenBank and PATRIC were analyzed and drawn into two trees. (A) Genomes belonging to the same subclade with the closest evolutionary distance are indicated in red-colored text labels, while isolates from South Africa are indicated in green-colored text labels. (B) The various phylogenetic clades and subclades are highlighted together and uniquely to show their evolution and epidemiology. The trees were drawn using the maximum-likelihood method in RAxML, using Streptomyces sp. strain MUSC164 as a reference. Bootstrap values are shown on the branches.