TABLE 1.
Sample code | Accession no. | Age (yr) | Gender | Referring hospital | ESBL | Species | No. of contigs | Size (Mb) | % G+C | No. of RNAs | No. of tRNAs | No. of coding sequences | N50 | L50 | Coverage (×) | No. of CRISPR arrays |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CF003 | NXKE00000000 | 25 | F | Tshwane Academic | + | C. freundii | 235 | 5.1 | 51.8 | 120 | 79 | 4,873 | 250,864 | 7 | 99 | 0 |
CF004 | NXKF00000000 | 34 | M | Tshwane Academic | − | C. freundii | 100 | 4.9 | 51.7 | 85 | 64 | 4,576 | 250,864 | 7 | 102 | 0 |
EC001 | NXIK00000000 | 42 | M | Tshwane Academic | + | E. hormaechei | 169 | 5.0 | 54.9 | 101 | 71 | 4,762 | 190,180 | 8 | 94 | 0 |
EC009 | NXIL00000000 | 51 | F | Tshwane Academic | + | E. hormaechei | 446 | 4.9 | 55.1 | 110 | 73 | 4,620 | 208,827 | 7 | 95 | 0 |
EC010 | NXIM00000000 | 61 | M | Tshwane Academic | + | E. hormaechei | 757 | 5.0 | 55.1 | 107 | 73 | 4,763 | 203,535 | 8 | 98 | 0 |
EC015 | NXJF00000000 | 18 | M | Tshwane Academic | + | E. hormaechei | 113 | 4.9 | 50.6 | 72 | 56 | 4,604 | 344,169 | 6 | 96 | 0 |
K001 | NXJG00000000 | 32 | F | Tshwane Academic | + | K. variicola | 403 | 6.0 | 57.0 | 75 | 56 | 5,913 | 105,256 | 18 | 90 | 1 |
K006 | NXJH00000000 | 27 | F | Tshwane Academic | + | E. hormaechei | 260 | 5.0 | 56.0 | 79 | 68 | 4,824 | 861,27 | 37 | 92 | 0 |
K130 | NXKO00000000 | + | E. hormaechei | 109 | 5.1 | 54.8 | 74 | 59 | 4,801 | 190,037 | 9 | 90 | 0 | |||
K063 | NXJN00000000 | 41 | M | Tshwane Academic | + | E. hormaechei | 223 | 5.2 | 55.9 | 102 | 78 | 4,951 | 60,240 | 55 | 90 | 2 |
PM005 | NXKC00000000 | 29 | M | Tshwane Academic | + | P. alcalifaciens | 96 | 4.0 | 39.2 | 72 | 60 | 3,542 | 193,947 | 8 | 102 | 0 |