TABLE 3.
Gene cassettes and integrons found in the isolates
| Sample code (MLST) | Integron(s) | Cassette arrays (location on contig)a |
|---|---|---|
| CF003 | None | None |
| CF004 | None | None |
| EC001 (ST-459) | In191, In705, In363 | dfrA14b(94-660)-attC(581-666) |
| EC009 (ST-231) | In191 | dfrA14b(593-1159)-attC(587-672); arr3(1584-2186)-attC(1578-1691)-ereA3(120-1583)-attC(114-170)-aadA1(1-119)-partial |
| EC010 (ST-231) | In191 | dfrA14b(471-1037)-attC(465-550); arr3(1584-2186)-attC(1578-1691)-ereA3(120-1583)-attC(114-170)-aadA1(1-119) |
| EC015 | In191, In705 | aadA1ai(52-907)-attC(854-913)-3'CS;dfrA14b(5384-5950)-attC(5378-5463) |
| K001 (ST-1791) | In191, In792 | dfrA14b(53-619)-attC(540-625); qacEΔ1(1484-1584)-aacA4(815-1483)-attC(814-880)-arr3(212-819)-attC(206-319)-3'CS |
| K006 | In46, In127, In615 | aacA4(2592-3230)-attC(2586-2657); aadA2(80-935)-attC(74-133)-3'CS; aacA27(5380-6117)- attC(5374-5443)-ereA2Δ::IS1247(3446-5116), aac3(2616-3425) arr7(2075-2470)-attC(74-130) |
| K130 (ST-90) | In46, In127, In615 | aadA2(53-908)-attC(47-106)-3'CS; aacA4(2566-3204)-attC(2560-2631); aacA27(5352-6089)-attC(5346-5415)-ereA2D::IS1247(3419-5088), aac3(2589-3398) arr7(2048-2443)-attC(47-103) |
| K063 | In46, In127, In615 | aadA2(125-980)-attC(119-178)-qacEΔ1-3'CS;aacA4(2638-3276)-attC(2632-2703); aacA27(5425-6162)-attC(5419-5488)-ereA2D, aac3(2661-3470), arr7(2120-2515)-attC(119-175)-qacEΔ1-3'CS |
| PM005 | In27 | dfrA12(5645-6228)-attC(6145-6234)-gcuF(6229-6548)-attC(6495-6554)-aadA2(6549-7404)-attC(7351-7410)-qacEΔ1(7513-7860)-sul1(7854-8693)-orf5(8821-9321)-3'CS |
a
3′CS refers to the 3' end of the coding sequence (DNA).