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Stability of SARS-CoV-2 Mpro complex in the presence of α-ketoamide 13b and amoxicillin. Average root mean square deviation (RMSD) for protein fit to backbone (A) for 100 ns, and average root mean square fluctuation of whole protein (B) following stabilisation. Mpro apo form is shown in blue, α-ketoamide 13b bound in red, and amoxicillin bound is shown in green. (C) shows the RMSF values the apo form subtracted from ligand bound forms of the protein.
