Table 1. Binding free energies of NMS-P118 and Niraparib in PARP-1 and PARP-2 (kcal/mol).
| Ligand | NMS-P118 | Niraparib | ||
|---|---|---|---|---|
| Protein | PARP-1 | PARP-2 | PARP-1 | PARP-2 |
| ΔEvdW | −50.94 ± 0.14 | −49.87 ± 0.12 | −48.65 ± 0.16 | −48.46 ± 0.14 |
| ΔEelec | −85.06 ± 0.70 | −54.88 ± 0.53 | −116.24 ± 0.91 | −86.98 ± 1.05 |
| ΔGGB | 95.71 ± 0.68 | 74.17 ± 0.52 | 125.96 ± 0.78 | 96.82 ± 0.89 |
| ΔGSA | −5.76 ± 0.01 | −5.82 ± 0.01 | −5.27 ± 0.01 | −5.26 ± 0.01 |
| ΔEnonpolar | −56.70 ± 0.12 | −55.69 ± 0.19 | −53.92 ± 0.26 | −53.72 ± 0.41 |
| ΔEpolar | 10.65 ± 0.34 | 19.29 ± 0.16 | 9.72 ± 0.29 | 9.84 ± 0.17 |
| ΔGbind | −46.06 ± 0.15 | −36.40 ± 0.14 | −44.35 ± 0.22 | −43.89 ± 0.24 |
Notes.
- ΔEvdW
- Van der Waals energy
- ΔEele
- Electrostatic energy
- ΔGGB
- Electrostatic contribution to solvation
- ΔGSA
- Non-polar contribution to solvation
- ΔEnonpolar
- Non-polar interaction
- ΔEpolar
- polar interaction
- ΔGbind
- Binding free energy