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. 2020 May 25;8:e9241. doi: 10.7717/peerj.9241

Table 1. Binding free energies of NMS-P118 and Niraparib in PARP-1 and PARP-2 (kcal/mol).

Ligand NMS-P118 Niraparib
Protein PARP-1 PARP-2 PARP-1 PARP-2
ΔEvdW −50.94 ± 0.14 −49.87 ± 0.12 −48.65 ± 0.16 −48.46 ± 0.14
ΔEelec −85.06 ± 0.70 −54.88 ± 0.53 −116.24 ± 0.91 −86.98 ± 1.05
ΔGGB 95.71 ± 0.68 74.17 ± 0.52 125.96 ± 0.78 96.82 ± 0.89
ΔGSA −5.76 ± 0.01 −5.82 ± 0.01 −5.27 ± 0.01 −5.26 ± 0.01
ΔEnonpolar −56.70 ± 0.12 −55.69 ± 0.19 −53.92 ± 0.26 −53.72 ± 0.41
ΔEpolar 10.65 ± 0.34 19.29 ± 0.16 9.72 ± 0.29 9.84 ± 0.17
ΔGbind −46.06 ± 0.15 −36.40 ± 0.14 −44.35 ± 0.22 −43.89 ± 0.24

Notes.

ΔEvdW
Van der Waals energy
ΔEele
Electrostatic energy
ΔGGB
Electrostatic contribution to solvation
ΔGSA
Non-polar contribution to solvation
ΔEnonpolar
Non-polar interaction
ΔEpolar
polar interaction
ΔGbind
Binding free energy