Table 4.
MspI cutting sites and fragment sizes for SARS-CoV-2 virus gene in promoter and gene body regions for eleven sequences.
| Region | Names of corresponding SARS-CoV-2 virus gene | Nucleotide positions of MspI sites | Fragment sizes (between 40 and 220 bps) |
|---|---|---|---|
| Promoter region | Pro-43,740,578 | No cut | – |
| Pro-43,740,577 | Single cut (at 235) | ||
| Pro-43,740,576 | No cut | ||
| Pro-43,740,575 | Single cut (at 235) | ||
| Pro-43,740,574 | Single cut (at 234) | ||
| Pro-43,740,573 | Single cut (at 435) | ||
| Pro-43,740,572 | Single cut (at 612) | ||
| Pro-43,740,571 | No cut | ||
| Pro-43,740,570 | No cut | ||
| Pro-43,740,569 | No cut | ||
| Pro-43,740,568 | Single cut (at 201) | 201 | |
| ORF8/43740577 | No cut | – | |
| ORF10/43740576 | No cut | – | |
| N/43740575 | No cut | – | |
| Gene body region | ORF7b/43740574 | No cut | – |
| ORF7a/43740573 | No cut | – | |
| ORF6/43740572 | No cut | – | |
| M/43740571 | Single cut (at 229) | – | |
| E/43740570 | No cut | – | |
| ORF3a/43740569 | Single cut (at 757) | 71 | |
| S/43740568 | Single cut (at 1423) | – | |
| orf1ab/43740578 | Multiple cut (at 3987, 12466, 12,933, 14,409, 15,693, 20,411) | – |