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. 2020 May 28;20:243. doi: 10.1186/s12870-020-02435-y

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© The Author(s) 2020

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 2 — SNP and indel variation among plastomes of Calypogeia. Track A shows nonsynonymous SNP occurrence within genes. Track B and C represent identified SNPs (small blue dots) and indels (small orange dots) per 100 bp window size (maximum value = 40). Line plot, comprising B and C track, represents SNPs (blue line) and indels (orange line) within each exon, intron or intergenic spacer (snp max. Value = 400, indel max. Value = 100). Track D represents percent of SNPs per CDS length (maximum value = 22) while track E represents percent of indels per CDS length (maximum value = 2). Track F represents percent of SNPs per noncoding region length (max. Value = 30) while track G represents percent of indels per noncoding region length (max value = 20)