Table 3. Genetic diversity statistics of the TLRs in four Chinese egret populations and two little egret populations.
Locus | Population | N | h | Gd | π | Ho | He | uHe | |
---|---|---|---|---|---|---|---|---|---|
TLR1LB | Chinese egret | XCY | 30 | 1 | 0 | 0 | 0.022 | 0.022 | 0.022 |
RY | 30 | 3 | 0.131 | 0.0003 | 0.133 | 0.123 | 0.125 | ||
MTS | 30 | 3 | 0.246 | 0.0008 | 0.089 | 0.084 | 0.085 | ||
XRT | 30 | 3 | 0.246 | 0.0006 | 0.133 | 0.120 | 0.122 | ||
Total | 120 | 4 | 0.158 | 0.0004 | 0.094 | 0.087 | 0.089 | ||
little egret | MTS | 10 | 6 | 0.889 | 0.0031 | 0.175 | 0.199 | 0.209 | |
XY | 10 | 6 | 0.867 | 0.0028 | 0.300 | 0.203 | 0.213 | ||
Total | 20 | 11 | 0.937 | 0.0034 | 0.238 | 0.201 | 0.211 | ||
TLR2A | Chinese egret | XCY | 30 | 6 | 0.669 | 0.0032 | 0.289 | 0.328 | 0.334 |
RY | 30 | 10 | 0.777 | 0.0035 | 0.330 | 0.348 | 0.354 | ||
MTS | 30 | 6 | 0.607 | 0.0031 | 0.159 | 0.293 | 0.298 | ||
XRT | 30 | 7 | 0.683 | 0.0032 | 0.263 | 0.257 | 0.262 | ||
Total | 120 | 15 | 0.690 | 0.0032 | 0.260 | 0.307 | 0.312 | ||
little egret | MTS | 10 | 8 | 0.956 | 0.0052 | 0.293 | 0.279 | 0.294 | |
XY | 10 | 6 | 0.867 | 0.0037 | 0.253 | 0.195 | 0.205 | ||
Total | 20 | 12 | 0.916 | 0.0045 | 0.273 | 0.237 | 0.249 | ||
TLR3 | Chinese egret | XCY | 30 | 5 | 0.630 | 0.0020 | 0.489 | 0.451 | 0.459 |
RY | 30 | 6 | 0.605 | 0.0019 | 0.533 | 0.473 | 0.481 | ||
MTS | 30 | 6 | 0.667 | 0.002 | 0.489 | 0.496 | 0.504 | ||
XRT | 30 | 6 | 0.747 | 0.0019 | 0.511 | 0.497 | 0.505 | ||
Total | 120 | 7 | 0.664 | 0.0020 | 0.506 | 0.479 | 0.487 | ||
little egret | MTS | 10 | 6 | 0.889 | 0.0022 | 0.220 | 0.233 | 0.245 | |
XY | 10 | 0 | 0 | 0 | 0 | 0 | 0 | ||
Total | 20 | 6 | 0.579 | 0.0012 | 0.110 | 0.117 | 0.123 | ||
TLR4 | Chinese egret | XCY | 30 | 2 | 0.508 | 0.0007 | 0.567 | 0.433 | 0.440 |
RY | 30 | 2 | 0.408 | 0.0006 | 0.467 | 0.444 | 0.452 | ||
MTS | 30 | 2 | 0.370 | 0.0005 | 0.367 | 0.299 | 0.305 | ||
XRT | 30 | 2 | 0.497 | 0.0006 | 0.500 | 0.433 | 0.440 | ||
Total | 120 | 2 | 0.464 | 0.0006 | 0.475 | 0.402 | 0.409 | ||
little egret | MTS | 10 | 2 | 0.467 | 0.0006 | 0.600 | 0.480 | 0.505 | |
XY | 10 | 2 | 0.533 | 0.0007 | 0.400 | 0.320 | 0.337 | ||
Total | 20 | 2 | 0.521 | 0.0007 | 0.500 | 0.400 | 0.421 | ||
TLR5 | Chinese egret | XCY | 30 | 3 | 0.246 | 0.0005 | 0.178 | 0.154 | 0.157 |
RY | 30 | 5 | 0.411 | 0.0006 | 0.233 | 0.196 | 0.199 | ||
MTS | 30 | 4 | 0.407 | 0.0006 | 0.200 | 0.200 | 0.203 | ||
XRT | 30 | 3 | 0.131 | 0.0002 | 0.044 | 0.043 | 0.044 | ||
Total | 120 | 5 | 0.299 | 0.0005 | 0.164 | 0.148 | 0.151 | ||
little egret | MTS | 10 | 4 | 0.733 | 0.0013 | 0.140 | 0.183 | 0.193 | |
XY | 10 | 2 | 0.467 | 0.0005 | 0.100 | 0.089 | 0.094 | ||
Total | 20 | 5 | 0.626 | 0.0010 | 0.120 | 0.136 | 0.143 | ||
TLR7 | Chinese egret | XCY | 30 | 2 | 0.186 | 0.0002 | 0.100 | 0.095 | 0.097 |
RY | 30 | 2 | 0.186 | 0.0002 | 0.300 | 0.255 | 0.259 | ||
MTS | 30 | 2 | 0.186 | 0.0002 | 0.200 | 0.180 | 0.183 | ||
XRT | 30 | 2 | 0.287 | 0.0003 | 0.233 | 0.299 | 0.305 | ||
Total | 120 | 2 | 0.208 | 0.0002 | 0.208 | 0.207 | 0.211 | ||
little egret | MTS | 10 | 4 | 0.644 | 0.0008 | 0.133 | 0.123 | 0.13 | |
XY | 10 | 2 | 0.467 | 0.0005 | 0.100 | 0.125 | 0.132 | ||
Total | 20 | 4 | 0.553 | 0.0007 | 0.117 | 0.124 | 0.131 | ||
TLR15 | Chinese egret | XCY | 30 | 6 | 0.543 | 0.0010 | 0.150 | 0.148 | 0.151 |
RY | 30 | 7 | 0.547 | 0.0013 | 0.161 | 0.133 | 0.136 | ||
MTS | 30 | 6 | 0.579 | 0.0016 | 0.106 | 0.143 | 0.145 | ||
XRT | 30 | 4 | 0.434 | 0.0012 | 0.161 | 0.147 | 0.149 | ||
Total | 120 | 9 | 0.520 | 0.0013 | 0.144 | 0.143 | 0.145 | ||
little egret | MTS | 10 | 7 | 0.911 | 0.0039 | 0.188 | 0.256 | 0.269 | |
XY | 10 | 4 | 0.711 | 0.0017 | 0.238 | 0.166 | 0.174 | ||
Total | 20 | 10 | 0.905 | 0.0031 | 0.213 | 0.211 | 0.222 |
N Total number of haplotypes, h the number of haplotypes, Gd gene diversity, π nucleotide diversity, Ho observed heterozygosity, He expected heterozygosity, uHe unbiased expected heterozygosity.