Table 1.
Data collection, image processing and refinement statistics
Data collection | |
Sample support | Quantifoil R1.2/1.3 200 mesh copper |
Microscope | Titan Krios |
Detector | K2 Summit post Quantum GIF |
Voltage (kV) | 300 |
Pixel size (Å) | 1.06 |
Box size (pix) | 140 |
No. movie frames | 38 |
Exposure time (s) | 7.6 |
Electron dose (e−/ Å2) | 50 |
No. of micrographs recorded/used | 2608/1196 |
Reconstruction | |
Software | RELION |
No. of particles picked/used | 227 552/63 968 |
Symmetry | C1 |
Final Resolution (Å) | 3.9 |
B factor (Å2) | 168 |
Accuracy of rotations (o) | 2.31 |
Accuracy of translations (pix) | 0.71 |
Refinement | |
Software | Phenix |
Map-sharpening B factor (Å2) | 168 |
Model Composition | |
Non-hydrogen atoms | 11 104 |
Protein residues | 729 |
DNA base pairs | 130 |
Average B factor (Å2) | 38.2 |
Correlation coefficient (around atoms) | 0.774 |
R.m.s. deviations | |
Bond lengths (Å) | 0.010 |
Bond angles (o) | 1.09 |
Ramachandran plot statistics (%) | |
Favored | 93.3 |
Allowed | 6.7 |
Outlier | 0 |
Molprobity analysis | |
All-atom clashscore | 3.93 |
Overall score | 1.62 |
Rotamer outliers (%) | 0 |
Cβ outliers (%) | 0 |
EMRinger score | 2.47 |