Table 3.
Primers used in this study
| Primer name | Primer sequence 5′-3′ |
|---|---|
| Anchored oligo d(T) primer | TTTTTTTTTTTTTTTTTTTTVN |
| Random hexamer | NNNNNN |
| ISM1 Total Forward | AGCAAGCGATATCTCGCCAA |
| ISM1 Total Reverse | GTCCATGACAATCCCAGCCA |
| ISM1 pA4 Forward | CACCAAGCATCACCTCCCAT |
| ISM1 pA4 Reverse | ATCCTCTTCGGCTGAGTTGG |
| FAT1 Total/pA1 Forward | TCACGGTGGTTGCCTTGCGT |
| FAT1 Total/pA1 Reverse | TGGATGTGCGTGGCTCCTGT |
| FAT1 pA2 Forward | CAAAGGGTTTGGATGGAAATGACAC |
| FAT1 pA2 Reverse | TCCCAATCAGCAGCGGTCAAG |
| MDV1 Total/pA1 Forward | TCACACAGAGCTTCCTAACTTCCA |
| MDV1 Total/pA1 Reverse | ACCCCAGGCGGTATGAGAAATGA |
| MDV1 pA2 Forward | TGAGGGTCGTGAAAATGGGGAC |
| MDV1 pA2 Reverse | TCTTCAAATGGGTTGACTTGATTGC |
| RPB2 Total Forward | GCCTGTAGAGGGTAGATCGAG |
| RPB2 Total Reverse | TCAGCCCGCAAATACCACAA |
| RPB2 pA2 Forward | TCATTTGTGCTGATCTTGCCA |
| RPB2 pA2 Reverse | TGCTTGAAAGTTCTCTCTGCT |
| RRD2 Total Forward | GGGAAGAATCCCCAACAAGAGC |
| RRD2 Total Reverse | ACTGCTCATCTGTGAGAGAGGG |
| RRD2 pA2 Forward | TCTCCACCAAGAGGCCACATAC |
| RRD2 pA2 Reverse | AGTAGCCGCAATAGCGCTCG |
| RAD53 Total/pA1 Forward | ACCAAACCTCAAAAGGCCCCGA |
| RAD53 Total/pA1 Reverse | AGGGGCAGCATTTTCTATGGGT |
| RAD53 Long Isoform/Between pAs Forward | AACCCGTCTTATGCCTTCCGGG |
| RAD53 Long Isoform/Between pAs Reverse | GCCGCCTCCGCCCCTTAATC |
| PDC1 Forward | GCCAGTCTTCGATGCTCCAC |
| PDC1 Total Reverse | ATCGCTTATTGCTTAGCGTTGG |
| PDC1 pA Span Reverse | ACTGTCGGCAACTTCTTGTCTGG |
| RPP1B Total Forward | ACGCTAAGGCTTTGGAAGGTAAGGA |
| RPP1B Total Reverse | AACCGAAACCCATGTCGTCGTCAGA |
| RPP1B pA Span Forward | GACGACGACATGGGTTTCGGT |
| RPP1B pA Span Reverse | TCGTAGCCCTTTCGTATGGACA |
| RAD53 Promoter Forward | AGGTAAGAAAGCAGAAAAGGACGG |
| RAD53 Promoter Reverse | GCGTGGATTGCTGTGTGGGT |
| RAD53 CDS Forward | TCCTAACGGGCCACTTACCTTT |
| RAD53 CDS Reverse | GGGCCCTTCATGATATGAGCCTCT |
| RAD53 End of CDS Forward | GTCGGCTAAGAAGCCGCCAG |
| RAD53 End of CDS Reverse | CGGGGCCTTTTGAGGTTTGGTC |
| RAD53 pA2 Forward | AGAAGTTTGGGTAATTCGCTGCT |
| RAD53 pA2 Reverse | TCTTCCCTTACGTGGTAGGC |
| GRS2 Total Forward | ATAACGATGGCTTCCCCGCT |
| GRS2 Total Reverse | ACGTAAAGCCTGCGAGATCC |
| GRS2 pA2 Forward | ACAACCCTGATGAATCGGACTGGG |
| GRS2 pA2 Reverse | ACAGGCGACAGTCCAAATGTTGAT |
| RTG2 Total Forward | AGGGTGGTGTTCGAGAGGGTTC |
| RTG2 Total Reverse | AATGGAGCATAAGGACGGGACGC |
| RTG2 pA2 Forward | AGTGCTTCCGTTCGTTCCAGA |
| RTG2 pA2 Reverse | TGCACGCCAATTTTAACCCTCTCT |
| 18S Forward | GATGCCCTTAGACGTTCTGG |
| 18S Reverse | GGCCTCACTAAGCCATTCAA |