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. 2020 May 1;48(10):5426–5441. doi: 10.1093/nar/gkaa316

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© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 7. — Characterization of Yap8–DNA interactions derived from the MD simulations. (A) Dynamic interactions maps illustrating the intermolecular wild-type Yap8–DNA interface. The interactions between pairs of the protein-DNA residues are characterized by a contact strength and its occurrence during the 0.5 μs MD simulation. (B) Comparison of the interaction patterns between pairs of residues of Yap8 wild-type or N20A-mutant proteins and DNA observed during the 0.5 μs MD simulations. Each specific contact is characterized by mean value of the contact strength and its standard deviation.