TABLE 1.
Identification and passport information for plant materials used for the genome sequencing and the resequencing panel.
| Accession | Source | Improvement status (name) | Collection location | Latitude/Longitude | Sequencing technology | SRR number2 |
| Resequencing Panel | ||||||
| BYU 1317 | BYU herbarium | Wild | Park City, UT, United States | 40.66796, −111.515032 | Illumina3 | SRR11123184 |
| Red Orach | Baker Creek Heirloom Seeds | Improved | Mansfield, MO, United States | N/A3 | Illumina | SRR11123183 |
| PI 310383 | USDA | Uncertain | Tashkent, Uzbekistan | N/A | Illumina | SRR11123172 |
| PI 323313 | USDA | Improved | Poland | N/A | Illumina | SRR11123170 |
| PI 345962 | USDA | Uncertain | Norway | N/A | Illumina | SRR11123169 |
| PI 357340 | USDA | Improved (Zolta) | Former Serbia/Montenegro | 41.91667000, 22.41667000 | Illumina | SRR11123168 |
| PI 357342 | USDA | Improved (Zolta Prilepska) | Former Serbia/Montenegro | 41.34640000, 21.55440000 | Illumina | SRR11123167 |
| PI 357344 | USDA | Improved (Lokalna Zolta) | Former Serbia/Montenegro | 41.81200000, 21.99470000 | Illumina | SRR11123166 |
| PI 357346 | USDA | Improved (Gradinarska) | Former Serbia/Montenegro | 41.57920000, 21.57190000 | Illumina | SRR11123165 |
| PI 357347 | USDA | Improved (Debarska) | Former Serbia/Montenegro | 41.52500000, 20.52750000 | Illumina | SRR11123164 |
| PI 370353 | USDA | Improved (Lokalna) | Former Serbia/Montenegro | 41.89890000, 21.40810000 | Illumina | SRR11123182 |
| PI 370354 | USDA | Improved (Mestna) | Former Serbia/Montenegro | 41.94140000, 21.41280000 | Illumina | SRR11123181 |
| PI 372512 | USDA | Wild | Alberta, Canada | 51.4502063, −112.7061764 | Illumina | SRR11123180 |
| PI 379088 | USDA | Improved (2261) | Former Serbia/Montenegro | 41.84890000, 21.82030000 | Illumina | SRR11123179 |
| PI 379093 | USDA | Improved (2475) | Former Serbia/Montenegro | 41.38250000, 22.28750000 | Illumina | SRR11123178 |
| PI 379095 | USDA | Improved, (Skopska) | Former Serbia/Montenegro | 42.00000000, 21.43330000 | Illumina | SRR11123177 |
| PI 420154 | USDA; 218 | Wild (218) | France | N/A | Illumina | SRR11123176 |
| Triple Purple | Wild Garden Seed Co. | Improved | Philomath, OR, United States | N/A | Illumina | SRR11123174 |
| P1reselection | Wild Garden Seed Co. | Improved | Philomath, OR, United States | N/A | Illumina | SRR11123173 |
| P6 reselection | Wild Garden Seed Co. | Improved | Philomath, OR, United States | N/A | Illumina | SRR11123171 |
| Golden | Wild Garden Seed Co. | Improved | Philomath, OR, United States | N/A | Illumina | SRR11123175 |
| Whole Genome Sequencing | ||||||
| Golden | Wild Garden Seed Co. | Improved | Philomath, OR, United States | Leaf tissue | Oxford Nanopore | SRR11147376 |
| Hi-C scaffolding | ||||||
| Golden | Wild Garden Seed Co. | Improved | Philomath, OR, United States | ChicagoTM Hi-C | Illumina | SRR11147368 |
| Golden | Wild Garden Seed Co. | Improved | Philomath, OR, United States | HiRiSETM Hi-C | Illumina | SRR11147367 |
| Transcriptome | ||||||
| Golden | Wild Garden Seed Co. | Improved | Philomath, OR, United States | Root tissue | Illumina | SRR11147369 |
| Golden | Wild Garden Seed Co. | Improved | Philomath, OR, United States | Stem tissue | Illumina | SRR11147370 |
| Golden | Wild Garden Seed Co. | Improved | Philomath, OR, United States | Floral tissue | Illumina | SRR11147371 |
| Golden | Wild Garden Seed Co. | Improved | Philomath, OR, United States | Leaf tissue | Illumina | SRR11147372 |
| Golden | Wild Garden Seed Co. | Improved | Philomath, OR, United States | Whole plantlet | Illumina | SRR11147373 |
| Golden | Wild Garden Seed Co. | Improved | Philomath, OR, United States | Root tissue – NaCl treated4 | Illumina | SRR11147374 |
| Golden | Wild Garden Seed Co. | Improved | Philomath, OR, United States | Leaf tissue – NaCl treated | Illumina | SRR11147375 |
Accessions of A. hortensis originated throughout Europe and North America. For the whole genome sequencing, Hi-C scaffolding and transcriptome data, the source tissue and/or library type is provided in the Latitude/Longitude column. 1Meters above sea level. 2Sequence read archive accession number for each resequenced line. Maintained by national Center for Biotechnology Information (https://dataview.ncbi.nlm.nih.gov/objects?linked_to_id=PRJNA607334). 3N/A indicates no data. 4Treated with 350 mM NaCl (see section “Materials and Methods”).