Skip to main content
. 2020 May 25;11:861. doi: 10.3389/fmicb.2020.00861

TABLE 2.

Plasmids involved in AMR gene dissemination.

Plasmid Inc type AMR genes associated with replicon typea Other genes found in isolatesb Conitg size (Kb)c Matches in NCBI databased (accession number) Bacterial species for matched plasmidd Sample origine % alignmentf Number of Isolates Number of farms Number of MLST STs
IncQ1 strAB, sul2 repAC mobB 4.4–4.7 pRSF1010 (NC001740) E. coli NK 53% (50–58%) 48 9 9
IncI1 qnrS1 18–106 pSTM2 (KF290378) Salmonella enterica subsp. enterica serovar Typhimurium Human 79% (75–82%) 19 6 7
IncFII strAB, blaTEM–1, sul2, tet(A), and dfrA14 intI, tra and trb 48 pM160133-p2 (CP022166) E. coli Human (urine) 95% (95–96%) 9 2 ST101
Unknown blaCTX–M–15, blaTEM–1, qnrS1, strAB, and sul2 21–36 pAR0162 (CP021681) pEco-CTXM15 (MF510423) E. coli NK Human (bile) 80% (73–95%) 92% 3 2 2
IncI1 blaCTX–M–1, sul2 tet(A) 107 p369 (IncI) (KT779550) E. coli Chicken 99.7% 1 1 (MSG43) ST3205
unknown blaCTX–M–1, sul3, dfrA1 intI 85 91% 1 1 (MSG17) ST101
IncA/C2 blaCMY2, (sul2) floR, tet(A), strAB 127-128 pSN254b (KJ909290) Aeromonas salmonicida Fish farm 92% 2 1 (MSG25) ST162
IncHI2A strAB, blaCMY2 Tellurite 124 pYD786-1 (KU254578) E. coli Human (urine) 82% (81–84%) 4 1 (MSG25) ST101
IncI1 blaCMY2 86 p85 (CP023362) E. coli Canine 99% 1 1 (MSG53) ST156

Summary of plasmids contigs present in isolates, as identified from WGS. aAMR genes identified using APHA SeqFinder from WGS. Genes that are variably present are in parenthesis. bOther genes found in isolate but not located on contigs harboring plasmid replicon. cSize of resolved contigs harboring AMR gene and plasmid replicon type. dPlasmid and bacteria with highest BlastN identity in NCBI database. eSample origin of bacterial species harboring matched plasmid. fPercentage of aligned bases to reference calculated using Snippy.