TABLE 2.

Overviews of other lincRNAs encompassing trait-associated variants.

LincRNA	Trait-associated variants	Diseases	Position	References
CASC16	rs3803662	Breast cancer, lung cancer	Exon	Orr et al., 2011
CASC15	rs6939340	Neuroblastoma	Intron	Maris et al., 2008
GAS5	rs145204276	Hepatocellular carcinoma (HCC), colorectal, and gastric cancers	Promoter	Tao et al., 2015; Li et al., 2018a
H19	rs217727	Coronary artery disease, type 2 diabetes	Exon	Gao et al., 2015
	rs2067051	Pneumoconiosis, coronary artery disease	Exon	Gao et al., 2015; Wu et al., 2016
	rs2107425	Ovarian and breast cancers, hypertrophic cardiomyopathy	Intron	Chu et al., 2016
	rs2839698	HCC, bladder, colorectal, and gastric cancer	Exon	Verhaegh et al., 2008; Chu et al., 2016; Yang et al., 2018
HULC	rs7763881, rs1041279	HCC	Intron	Wang et al., 2018a
LINC00673	rs11655237	Pancreatic cancer	Exon	Zheng et al., 2016
LINC00951	rs11752942	Esophageal squamous cell carcinoma (ESCC)	Exon	Wu et al., 2013
LOC105378318	rs1875147	Leprosy	Intron	Fava et al., 2017
MALAT1	rs619586	Pulmonary arterial hypertension (PAH), coronary atherosclerotic and congenital heart disease (CAD/CHD), breast cancer	Exon	Zhuo et al., 2017; Li et al., 2018b
	rs1194338	Colorectal cancer	Promoter	Li et al., 2017
	rs4102217	HCC	Promoter	Wang et al., 2018b
MEG3	rs941576, rs34552516	Type 1 diabetes (T1D)	Intron	Wallace et al., 2010; Westra et al., 2018
MIAT	rs2331291	Myocardial infarction	Intron	Ishii et al., 2006
	rs1894720	Paranoid schizophrenia	Exon	Rao et al., 2015
PCGEM1	rs6434568, rs16834898	Prostate cancer	Intron	Xue et al., 2013
PCAT19	rs11672691	Prostate cancer	Promoter	Gao et al., 2018
PTCSC2	rs965513	Papillary thyroid carcinoma (PTC)	Intron	He et al., 2015
PTCSC3	rs944289	PTC, large-vessel ischemic stroke	Promoter	Jendrzejewski et al., 2012; Lee et al., 2016
TDRG1	rs8506	ESCC, gastric cancer	Exon	Han et al., 2017
TINCR	rs2288947, rs8105637	Colorectal cancer, gastric cancer	Exon, intron	Zheng et al., 2017

LincRNA, long intergenic non-protein coding RNA.