TABLE 3.
Tools | Functional annotation | Link | References |
LincSNP 2.0 | Store and annotate disease-associated SNVs in human lncRNAs and their transcription factor binding sites (TFBSs) | http://bioinfo.hrbmu.edu.cn/LincSNP | Ning et al., 2017 |
lncRNASNP2 | Comprehensive information of SNVs and mutations in lncRNAs, as well as their impacts on lncRNA structure and function | http://bioinfo.life.hust.edu.cn/lncRNASNP2 | Miao et al., 2018 |
LncVar | A database of genetic variation associated with long non-coding genes in six species | http://bioinfo.ibp.ac.cn/LncVar | Chen et al., 2017 |
The 1000 Genomes Project | The largest public catalog of human variation and genotype data | http://www.internationalgenome.org/ | Genomes Project et al., 2015 |
dbSNP | A public-domain archive for a broad collection of simple genetic polymorphisms | https://www.ncbi.nlm.nih.gov/snp | |
GWAS Catalog | A catalog that has provided data from published genome-wide association studies | www.ebi.ac.uk/gwas/ | MacArthur et al., 2017 |
GWAS4D | A web server that systematically evaluates GWAS signals and identifies context-specific regulatory variants | http://mulinlab.tmu.edu.cn/gwas4d | Huang et al., 2018 |
SNVs, single-nucleotide variants; lncRNAs, long non-coding RNAs; GWAS, genome-wide association study.