Table. Multilevel genome typing summary statistics with application to 9,096 Salmonella Typhimurium genomes.

MGT LEVEL	LOCI	TOTAL LENGTH (KB)	PROPORTION OF LT2 GENOME SIZE (%)	AVERAGE NUMBER OF ISOLATES PER ST	NUMBER OF STS FROM 9,096 GENOMES
MGT1a	7	3.3	0.07	115	74
MGT2	18	10.8	0.22	37.43	256
MGT3	77	53.2	1.10	8.25	1,162
MGT4	156	105.6	2.17	4.59	2,110
MGT5	241	210.4	4.33	2.94	3,296
MGT6	682	525.8	10.82	1.87	5,188
MGT7	1,044	1,051.6	21.67	1.48	6,626
MGT8	2,956b	2,788.1	57.40	1.24	7,926
MGT9	5,293c	4,013.3	82.62	1.17	8,425

LT2: reference LT2 genome (GenBank number: NC_003197.2); MGT: multilevel genome typing; MLST: multilocus sequence typing; ST: sequence type.

^a Classical seven-gene MLST scheme.

^b Salmonella core genes.

^c S. Typhimurium core genes and core intergenic regions.

For complete lists of loci see Supplementary Methods Table 4.