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. Author manuscript; available in PMC: 2021 Mar 15.
Published in final edited form as: J Comput Chem. 2019 Aug 9;41(7):715–730. doi: 10.1002/jcc.26036

Figure 6:

Figure 6:

Samples from evenly spaced thermodynamic states for states CDx, taken from a representative simulation of 1kzk with the Desolvated solvation option. The protein structure structure is shown with ribbons and the crystallographic ligand pose is shown with a thick licorice representation and purple carbon atoms. The same illustration scheme is used in Figures 7 and 8. These figures were generated with VMD49.