Table 2. Characteristics (the 5’ end labeling fluorophores; F: the forward primer sequences; R: the reverse primer sequences; Ta: annealing temperature; sizes of the amplified fragments in base pairs-bp) of the microsatellites (SSRs) developed for Fusarium oxysporum f. sp. phaseoli isolates.
SSR/ fluorophores | Primer sequences (5’-3’) | Motifs | Number of Alleles | TA (°C) | Sizes of the amplified Fragments (bp) | PIC | GenBank Accession number |
---|---|---|---|---|---|---|---|
FOP 01-B01 NED | F – CCGCCGATTTCCTTACCT | (AT)9 | 03 | 58 | 237-254 | 0.13 | MK622886 |
R - GCACCCTTCAAACCTCCA | |||||||
FOP 07-B01 PET | F - TGAGCGAATGGGAAGAGG | (GGAG)5 | 06 | 58 | 151-225 | 0.54 | MK622887 |
R - TGCCAAGGGAGTATCATTTC | |||||||
FOP 10-B01 PET | F – ATGGGATAGGCGGTTTGG | (TC)3/(AG)3 | 05 | 58 | 236-255 | 0.77 | MK602310 |
R - ACTTGGGGTTGAGCGTTG | |||||||
FOP 13-B01 6FAM | F - TTCTTGCTGATCGCCTCA | (GGCAT)5 | 02 | 59 | 152-167 | 0.37 | MK602312 |
R - CCTCCCCTGCAATAAGAGC | |||||||
FOP 15-B01 NED | F - CCGTCTTCATCTTGGCGTCTA | (AGAT)4 | 03 | 54 | 209-225 | 0.09 | MK622888 |
R - TATCTAAGGGGTGGGACGGAG | |||||||
FOP 16-B01 PET | F - CCGCGCTCTCGAGCAGGG | (ACT)3 | 02 | 54 | 202-205 | 0.35 | MK602313 |
R - TGCCGAAGTAAAAGCACGG | |||||||
FOP 20-B01 6-FAM | F - CCGTTTGGCGCAAGTT | (GA)6 | 10 | 54 | 148-188 | 0.70 | MK622889 |
R - CGAGCGGCTTGTCTTCA | |||||||
FOP 28-B01 PET | F - GTTGCGCTCCCCAATATG | (TC)3/(AT)3 | 02 | 56 | 204-208 | 0.09 | MK622890 |
R - CCTCCATTGCCATCCATTT | |||||||
FOP 35-B01 NED | F - GGCTGGTGGTTTCAAGAGAG | (CAC)6 | 06 | 58 | 210-236 | 0.40 | MK622891 |
R – CAAGGCTTCTTCACGGGTAA | |||||||
FOP 37-B01 NED | F - GCAACACAGGAGGTGGTA | (TGCT)3 | 04 | 54 | 180-192 | 0.29 | MK622892 |
R - CAAGGGTATTGGTGCTTG | |||||||
FOP 08-B02 6-FAM | F - ACAGTGGCTCGTGACTCCA | (CT)3(TA)3 | 06 | 59 | 222-240 | 0.38 | MK602309 |
R - TGTTGGCACAGAGGCAGA | |||||||
FOP 09-B02 NED | F - TGCAGCGATGAGATTGGA | (CCA)3 | 03 | 54 | 165-169 | 0.35 | MK622893 |
R - GCGTCATCTCGTGAATCG | |||||||
FOP 11-B02 VIC | F - AACAGCCGAAGCCGATG | (AG)7 | 07 | 59 | 259-305 | 0.62 | MK602311 |
R - TTCACCTTCCACTTGCACA | |||||||
FOP 18-B02 PET | F - AATGCGGCCACTGTGATT | (TCA)3/(ATC)2 | 04 | 59 | 151-164 | 0.33 | MK602314 |
R - GCAGAAGTTGCGGTTGTG | |||||||
FOP 23-B02 NED | F - CAGGGGCACAGTTCGGTA | (TC)3/(AT)3 | 04 | 59 | 190-196 | 0.35 | MK622894 |
R - ATCGGCTGGGACATGAAG |