Table 1. Distribution of predicted G4 structures (G4s) in wheat genome. Genic regions are composed of 5′ UTR, exon, intron, and 3′ UTR regions of high confidence gene models. G4 density indicates total number of G4 motifs per bp. Chromosomes which possess the highest and lowest G4 densities were highlighted with italic bold letters.
Whole genome | Genic regions | |||||
---|---|---|---|---|---|---|
Chromosome | Chromosome length | Average size of G4 motifs | # of G4 motifs | G4 density (x106) | # of G4 motifs | G4 density (x106) |
1A | 594,102,056 | 27.8 | 45,245 | 76 | 1,524 | 98 |
1B | 689,851,870 | 27.5 | 52,963 | 77 | 1,617 | 96 |
1D | 495,453,186 | 27.9 | 39,576 | 80 | 1,498 | 96 |
2A | 780,798,557 | 27.8 | 58,308 | 75 | 1,875 | 93 |
2B | 801,256,715 | 27.6 | 58,814 | 73 | 1,837 | 85 |
2D | 651,852,609 | 27.9 | 51,315 | 79 | 1,886 | 94 |
3A | 750,843,639 | 27.9 | 56,277 | 75 | 1,747 | 96 |
3B | 830,829,764 | 27.6 | 61,460 | 74 | 1,863 | 90 |
3D | 615,552,423 | 27.9 | 48,560 | 79 | 1,729 | 93 |
4A | 7445,88,157 | 27.7 | 54,977 | 74 | 1,593 | 91 |
4B | 673,617,499 | 27.6 | 48,403 | 72 | 1,374 | 94 |
4D | 509,857,067 | 27.9 | 38,527 | 76 | 1,221 | 92 |
5A | 709,773,743 | 27.9 | 54,601 | 77 | 1,751 | 95 |
5B | 713,149,757 | 27.7 | 52,838 | 74 | 1,860 | 93 |
5D | 566,080,677 | 27.5 | 47,830 | 84 | 1,776 | 94 |
6A | 618,079,260 | 27.9 | 45,641 | 74 | 1,371 | 96 |
6B | 720,988,478 | 27.6 | 54,982 | 76 | 1,556 | 92 |
6D | 473,592,718 | 27.8 | 38,427 | 81 | 1,259 | 88 |
7A | 736,706,236 | 28.2 | 56,095 | 76 | 1,729 | 92 |
7B | 750,620,385 | 27.8 | 55,745 | 74 | 1,611 | 91 |
7D | 638,686,055 | 27.9 | 51,229 | 80 | 1,693 | 93 |
Overall | 14,066,280,851 | 27.8 | 1,071,813 | 76 | 34,370 | 93 |