Table 2: Ligand-residue MM-GBSA interaction energies (kcal/mol).
PubChem IDs are listed for the two bio-actives. The common hotspots for all the ligands are: HIS41, MET49, ASN142, HIS164, MET165, GLU166, and GLN189.
Residue ID | Residue Type | Co-crystal Ligand | Neutral Approved Drug | Charged Approved Drug | Bioactive | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
DB08889 | DB12329 | DB00385 | DB01601 | DB11574 | DB01082 | DB03147 | DB11184 | 23727975 | 88143175 | |||
24 | THR | −0.09 | −0.15 | −0.04 | −0.04 | −0.06 | −0.93 | −0.01 | −0.10 | −0.28 | −0.08 | −1.40 |
25 | THR | −1.51 | −1.50 | −0.15 | −0.55 | −1.56 | −4.04 | −0.10 | −1.60 | −3.18 | −0.64 | −3.68 |
26 | THR | −0.61 | −0.90 | −0.17 | −0.21 | −0.27 | −6.19 | −0.07 | −3.08 | −4.51 | −0.17 | −4.33 |
27 | LEU | −3.74 | −1.24 | −0.52 | −1.03 | −1.26 | −2.20 | −0.71 | −2.60 | −2.48 | −0.25 | −1.64 |
28 | ASN | −4.78 | −0.09 | −0.03 | −0.06 | −0.05 | −0.19 | −0.10 | −0.22 | −0.07 | −0.08 | −0.14 |
39 | PRO | −0.84 | −0.19 | −0.09 | −0.13 | −0.24 | −0.20 | −0.31 | −0.32 | −0.11 | −0.13 | −0.17 |
41 | HIS | −6.74 | −6.56 | −2.93 | −5.41 | −3.58 | −3.79 | −5.38 | −7.78 | −4.18 | −3.02 | −2.99 |
44 | CYS | −1.02 | −0.13 | −0.09 | −0.07 | −1.37 | −0.67 | −0.05 | −2.50 | −0.37 | −0.09 | −0.43 |
45 | THR | −0.60 | −0.32 | −0.24 | −0.06 | −1.10 | −0.59 | −0.02 | −1.76 | −0.26 | −0.17 | −0.47 |
46 | SER | −0.91 | −1.79 | −1.54 | −0.62 | −4.26 | −1.45 | −0.07 | −3.53 | −1.28 | −1.79 | −2.70 |
49 | MET | −4.39 | −2.37 | −3.14 | −2.14 | −5.57 | −4.18 | −1.07 | −5.46 | −2.23 | −2.17 | −3.93 |
52 | PRO | −0.76 | −0.06 | −0.08 | −0.08 | −0.03 | −0.19 | −0.01 | −0.07 | −0.02 | −0.06 | −0.04 |
54 | TYR | −0.65 | −0.12 | −0.45 | −0.22 | −0.14 | −0.54 | −0.15 | −0.17 | −0.11 | −0.09 | −0.05 |
119 | ASN | −0.16 | −0.02 | −0.07 | −0.09 | −0.02 | −1.41 | −0.02 | −0.44 | −0.05 | −0.02 | −0.05 |
140 | PHE | −0.19 | −0.98 | −0.04 | −0.09 | −0.02 | −0.06 | −0.80 | −0.08 | −0.17 | −0.35 | −1.81 |
141 | LEU | −0.28 | −1.16 | −0.10 | −0.23 | −0.03 | −0.09 | −1.00 | −0.05 | −0.27 | 0.49 | −2.64 |
142 | ASN | −3.50 | −4.39 | −3.46 | −3.66 | −0.59 | −2.89 | −6.70 | −4.56 | −4.58 | −5.50 | −6.82 |
143 | GLY | −2.23 | −0.75 | −0.96 | −0.36 | −0.37 | −2.34 | −1.87 | −3.77 | −1.50 | −2.48 | −2.11 |
144 | SER | −13.05 | −1.42 | −0.12 | −0.17 | −0.10 | −0.31 | −2.09 | −1.19 | −0.60 | −5.29 | −2.33 |
145 | CYS | −66.34 | −3.22 | −0.71 | −1.53 | −1.59 | −2.09 | −3.95 | −4.27 | −1.50 | −2.96 | −3.83 |
146 | GLY | −10.20 | −0.02 | −0.01 | −0.03 | −0.03 | −0.02 | −0.06 | −0.04 | −0.03 | −0.06 | −0.06 |
147 | SER | −0.64 | −0.05 | −0.01 | −0.02 | −0.01 | −0.02 | −0.06 | −0.05 | −0.02 | −0.02 | −0.10 |
163 | HIS | −3.88 | −1.65 | −0.13 | −0.38 | −0.14 | −0.17 | −2.82 | −0.40 | −0.63 | −1.22 | −1.18 |
164 | HIS | −3.92 | −4.89 | −1.41 | −3.65 | −1.80 | −1.56 | −5.26 | −5.44 | −1.30 | −2.51 | −2.53 |
165 | MET | −5.49 | −7.83 | −4.16 | −4.63 | −3.46 | −3.65 | −5.27 | −4.91 | −4.74 | −6.50 | −4.43 |
166 | GLU | −7.31 | −6.67 | −6.05 | −6.76 | −0.82 | −1.77 | −17.06 | −6.44 | −4.91 | −14.38 | −23.80 |
167 | LEU | −1.67 | −1.36 | −1.26 | −2.11 | −0.63 | −1.28 | −1.92 | −0.78 | −1.31 | −2.06 | −1.16 |
168 | PRO | −2.73 | −1.17 | −1.11 | −2.50 | −1.26 | −2.66 | −2.55 | −0.35 | −1.18 | −2.15 | −0.91 |
170 | GLY | −0.05 | −0.08 | −0.01 | −0.03 | −0.02 | −0.07 | −0.54 | −0.01 | −0.03 | −0.11 | −0.17 |
172 | HIS | −0.17 | −1.15 | −0.09 | −0.18 | −0.07 | −0.10 | −0.70 | −0.09 | −0.33 | −1.07 | −1.07 |
186 | VAL | −0.31 | −0.61 | −0.28 | −0.18 | −0.33 | −0.37 | −0.09 | −0.60 | −0.27 | −0.28 | −0.29 |
187 | ASP | −1.49 | −1.29 | −2.24 | −1.36 | −3.74 | −1.90 | −2.85 | −2.05 | −1.64 | −1.34 | −1.17 |
188 | ARG | −1.60 | −2.04 | −1.94 | −1.74 | −1.68 | −2.34 | −0.57 | −1.75 | −1.85 | −1.82 | −1.17 |
189 | GLN | −5.25 | −13.79 | −5.90 | −11.52 | −8.10 | −7.69 | −2.27 | −6.11 | −8.78 | −10.07 | −6.93 |
190 | THR | −1.42 | −1.56 | −3.94 | −2.43 | −1.55 | −3.84 | −0.05 | −1.08 | −3.22 | −0.99 | −0.60 |
191 | ALA | −1.65 | −2.48 | −0.23 | −0.68 | −1.52 | −1.56 | −0.03 | −0.16 | −0.81 | −0.46 | −0.13 |
192 | GLN | −2.24 | −3.48 | −3.96 | −2.28 | −1.13 | −1.80 | −0.16 | −1.23 | −6.28 | −1.72 | −0.75 |