Table 2. Search parameters.
Item | Values |
---|---|
Main search ppm | 6 |
Missed cleavage | 2 |
MS/MS tolerance ppm | 20 |
De-isotopic | True |
Enzyme | Trypsin |
Database | Felinae |
Fixed modification | Carbamidomethyl (C) |
Variable modification | Oxidation (M), Acetyl (Protein N-term) |
Decoy database pattern | Reverse |
LFQ | True |
LFQ min ratio count | 1 |
Match between runs | 2 min |
The results filtering parameter was a peptide FDR ≤ 0.01.
LFQ, label-free quantification; FDR, false discovery rate.