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. 2020 Apr 23;21(3):e45. doi: 10.4142/jvs.2020.21.e45

Table 2. Search parameters.

Item Values
Main search ppm 6
Missed cleavage 2
MS/MS tolerance ppm 20
De-isotopic True
Enzyme Trypsin
Database Felinae
Fixed modification Carbamidomethyl (C)
Variable modification Oxidation (M), Acetyl (Protein N-term)
Decoy database pattern Reverse
LFQ True
LFQ min ratio count 1
Match between runs 2 min

The results filtering parameter was a peptide FDR ≤ 0.01.

LFQ, label-free quantification; FDR, false discovery rate.