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. 2020 Apr 21;21(3):e43. doi: 10.4142/jvs.2020.21.e43

Table 4. Estimated nucleotide substitution rates of complete genomes for each gene.

Gene No. of sequences used The clock modela Mean rateb 95% HPD interval
Complete 200 UCLD 2.85 × 10−4 2.23 × 10−4 to 3.64 × 10−4
NS1 200 UCLD 1.96 × 10−4 1.46 × 10−4 to 2.56 × 10−4
NS2 200 UCLD 3.92 × 10−4 2.50 × 10−4 to 5.44 × 10−4
VP1 200 UCLD 2.47 × 10−4 1.77 × 10−4 to 3.33 × 10−4
VP2 277 UCLD 2.95 × 10−4 2.32 × 10−4 to 3.69 × 10−4

UCLD, uncorrelated relaxed clock model; HPD, highest posterior density.

aUCLD with an underlying lognormal distribution. bThe geometric mean nucleotide substitution rate (substitutions/site/year).