Table 4. Estimated nucleotide substitution rates of complete genomes for each gene.
Gene | No. of sequences used | The clock modela | Mean rateb | 95% HPD interval |
---|---|---|---|---|
Complete | 200 | UCLD | 2.85 × 10−4 | 2.23 × 10−4 to 3.64 × 10−4 |
NS1 | 200 | UCLD | 1.96 × 10−4 | 1.46 × 10−4 to 2.56 × 10−4 |
NS2 | 200 | UCLD | 3.92 × 10−4 | 2.50 × 10−4 to 5.44 × 10−4 |
VP1 | 200 | UCLD | 2.47 × 10−4 | 1.77 × 10−4 to 3.33 × 10−4 |
VP2 | 277 | UCLD | 2.95 × 10−4 | 2.32 × 10−4 to 3.69 × 10−4 |
UCLD, uncorrelated relaxed clock model; HPD, highest posterior density.
aUCLD with an underlying lognormal distribution. bThe geometric mean nucleotide substitution rate (substitutions/site/year).