| Antibodies |
| N/A |
|
|
| |
|
|
| |
|
|
| |
|
|
| |
|
|
| Bacterial and Virus Strains |
| BL21 |
Lab stock |
|
| TOP 10 |
Lab stock |
|
| |
|
|
| |
|
|
| |
|
|
| Biological Samples |
|
|
| N/A |
|
|
| |
|
|
| |
|
|
| |
|
|
| |
|
|
| Chemicals, Peptides, and Recombinant Proteins |
| CK1 delta |
NEB |
P6030 |
| |
|
|
| |
|
|
| |
|
|
| |
|
|
| Critical Commercial Assays |
| N/A |
|
|
| |
|
|
| |
|
|
| |
|
|
| |
|
|
| Deposited Data |
| N/A |
|
|
| |
|
|
| |
|
|
| |
|
|
| |
|
|
| Experimental Models: Cell Lines |
| N/A |
|
|
| |
|
|
| |
|
|
| |
|
|
| |
|
|
| Experimental Models: Organisms/Strains |
| See KEY RESOURCES TABLE |
|
|
| |
|
|
| |
|
|
| |
|
|
| |
|
|
| |
|
|
| Oligonucleotides |
| See KEY RESOURCES TABLE |
|
|
| |
|
|
| |
|
|
| |
|
|
| |
|
|
| Recombinant DNA |
| N/A |
|
|
| |
|
|
| |
|
|
| |
|
|
| |
|
|
| Software and Algorithms |
| SNP filtering |
This paper: https://github.com/jorgensenlab/WGS-variant-filtering
|
|
| GraphPad prism |
https://www.graphpad.com/scientific-software/prism/ |
|
| STAR aligner |
https://github.com/alexdobin/STAR |
|
| DESeq2 |
https://bioconductor.org/packages/release/bioc/html/DESeq2.html |
|
| DEXseq |
https://bioconductor.org/packages/release/bioc/html/DEXSeq.html |
|
| Burrows-Wheeler Aligner |
http://bio-bwa.sourceforge.net/ |
|
| Unified genotyper GATK |
https://software.broadinstitute.org/gatk/documentation/tooldocs/3.8–0/org_broadinstitute_gatk_tools_walkers_genotyper_UnifiedGenotyper.php |
|
| SNPEff |
http://snpeff.sourceforge.net/ |
|
| ApE A plasmid Editor |
https://jorgensen.biology.utah.edu/wayned/ape/ |
|
| Fiji – Fiji is just imageJ |
https://fiji.sc/ |
|
| SapTrap builder |
https://www.micropublication.org/journals/biology/m4qq-2x02/ |
|
| Primer3Plus |
http://www.bioinformatics.nl/cgi-bin/primer3plus/primer3plus.cgi |
|
| WormLab |
https://www.mbfbioscience.com/wormlab |
|
| Vutara SRX |
https://www.bruker.com/products/fluorescence-microscopes/vutara-super-resolution-microscopy/overview/srx-software-vutara-super-resolution.html |
|
| Zeiss LSM5 Pascal |
No longer supported |
|
| Zeiss LSM510 |
No longer supported |
|
| Zeiss ZEN black |
https://www.zeiss.com/microscopy/us/products/microscope-software/zen-lite.html |
|
| Nikon I series |
https://www.nikon.com/products/microscope-solutions/support/download/software/biological/90i_v24432.htm |
|
| |
|
|
| |
|
|
| Other |
| |
|
|
| |
|
|
| |
|
|
| |
|
|
| |
|
|
