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. 2020 Jun 1;11:2719. doi: 10.1038/s41467-020-16322-5

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© The Author(s) 2020

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — Phylogenetic trees showing the major lineages of A. baumannii, P. aeruginosa, K. pneumoniae species complex and E. coli, indicating the position of select sequence types (ST) and clonal groups (CG). KpI K. pneumoniae sensu stricto, KpII K. quasipneumoniae, KpIII K. variicola. Tree ring: select carbapenem resistance profiles from Fig. 2 are shown in colour. The remaining carbapenem resistance profiles are shown in light grey. Other resistance profiles (susceptible to carbapenems) are shown in white for simplicity. The three-letter antibiotic codes are as in Table 1. The pie charts show the relative abundance of the resistance profiles in the retrospective collection of sequenced genomes. The bar charts show the distribution of carbapenemase genes across the key resistance profiles. The scale bars show the number of SNPs per variable site. The data are available at https://microreact.org/project/ARSP_ABA_2013-14 (Aba), https://microreact.org/project/ARSP_PAE_2013-14 (Pae), https://microreact.org/project/ARSP_KPN_2013-14 (Kpn) and https://microreact.org/project/ARSP_ECO_2013-14 (Eco).