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. 2020 May 26;14:508. doi: 10.3389/fnins.2020.00508

TABLE 1.

Oligonucleotide primers used for RT-qPCR, indicating the location of each primer in the corresponding Ensembl sequences of the Syrian hamster(a).

Gen target ID transcript ensembl Mesocricetus auratusa Primer forward Primer reverse Size of products Eb
Egr1 ENSMAUG00000007358 CAGC(A/G)GCGC(T/C)TTCAATCCTC GTGGTCAGGTGCTCGTAGGG 60 2.04
Egr2 ENSMAUG00000021143 AGGCCCTTGGATCTCCCATA CAGCTGGCACCAGGGTACTG 162 2.00
Egr3 ENSMAUG00000000747 CCACAAGCCCTTCCAGTGTC GTGCGGATGTGAGTGGTGAG 75 1.98
Ttr ENSMAUG00000011770 GCCTCGCTGGACTG(G/A)(C/T)ATTT(A/G) TCGGACAGCATCCAGGACTT 85 2.00
Rxfp2 ENSMAUG00000017558 AAGCTGTGCCAAAGGTTTCTA TTGCTGAAAACTTTGACTGGAA 88 1.99
C6 ENSMAUG00000007780 CTGTGTCCTTGGAGACTACGG GTCACCAGAGGTTCTGTGCAT 126 1.98
Atp2a3 ENSMAUG00000005976 TGTGTGGCTGTATGGGTCAT GCCACGGCAATCTTGAAGTA 92 1.98
Rab29 ENSMAUG00000017388 TTGCTCTGAAGGTTCTCCAGT GGCTGTTGCTGAAAGTAGTGG 168 2.06
Gm12695 ENSMAUG00000020018 GGTCTCCCCAGAAGAAAGTCT AGGCTGGAGTTCAATGGGTA 162 1.94
Grin2c ENSMAUG00000019504 GTTCAGCCGTTGGCCTCTAT ACCCAGATCACACCAGACCT 90 1.90
Renbp ENSMAUG00000019504 CGAGCACAAGTCATTGACAAA ATCATGGCTTCACTGTGTGG 158 2.09
Slc6a4 ENSMAUG00000012677 GCGGTACTGGATGAGTTTCC TCTATGAGTGCCACCGTGAG 176 1.98
Mmp3 ENSMAUG00000011335 CCGTGATACCCACCAAATCT GGGCCAAAATGAAGAGATCA 92 1.93
Atf3 ENSMAUG00000011335 GGCAACTGGGGAGTCCTTAT GAGACGAAGGATGCTCTTGC 120 1.98
Gadd45g ENSMAUG00000011335 TTGCTGTTCTTGGATCGTACA GACTTTGGCGGACTCGTAGA 168 1.89
Slc13a4 ENSMAUG00000018591 AGGGGATAGAGCCCATCATC GCTGACAAACTCCGTGACAA 165 2.07
Npas4 ENSMAUG00000016391 GGCTACATTCCTTTCCGATG CTACAAAGTCACCGCAGCAC 149 2.01
Wdr38 ENSMAUG00000005054 AGCTTCAGCCCTGACTCAAA GAGGCTGAGTAGCACAAGCA 65 2.07
Ogn ENSMAUG00000011988 ACCATTGCCAAAGGAATCAG GTTCTTCTAACAGAGACAGTTTTGAA 170 2.08
Sucnr1 ENSMAUG00000019748 CAGTCTGTGCCTGACTTTGC ACAGAGAAGATCGCCACCAC 164 1.95
Fos ENSMAUG00000019419 CAGCTCGCACCAGTGTCTAC ACTTCCGGAAAACATCATGG 76 2.00
Kcns1 ENSMAUG00000000788 CGCTTGTGCGATGATTATGA ACTCGCCGCTCCAGATAG 100 2.02
Junb ENSMAUG00000004233 GCAGCTACTTTTCGGGTCAG TTCATCTTGTGCAGGTCGTC 200 1.97
Kcnj13 ENSMAUG00000010435 TCAAAGATACCGGAGGATGG CAAAGACAAGCCAGTGGACA 178 2.07
Cd163 ENSMAUG00000000759 AGAAGAGAAGCGGAGGGTTC ACCAGGACAAACTCCAGACG 163 2.03
Fosb ENSMAUG00000000999 AGAAGAGAAGCGGAGGGTTC ACCAGGACAAACTCCAGACG 182 2.09
Slc28a1 ENSMAUG00000015388 TTAATTGCTGCCTCCGTAATG GAACTTGGACTCCTCCACCTC 84 1.94
Actb ENSMAUG00000008763 AGCCATGTACGTAGCCATCC ACCCTCATAGATGGGCACAG 105 2.03

qPCR primer efficiency (Eb) was calculated according to the following equation: E = 10(–1/slope).