Skip to main content
. Author manuscript; available in PMC: 2021 May 5.
Published in final edited form as: Cell Metab. 2020 Mar 25;31(5):920–936.e7. doi: 10.1016/j.cmet.2020.03.004

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
CD4-PE Clone GK1.5 (1:200) Biolegend #100408
CD25-PE Clone PC61 (1:200) Biolegend #102008
IRF4-PE Clone IRF4.3F4 (1:200) Biolegend #646404
F4/80-PE Clone BM8 (1:200) Biolegend #123110
CD185-PE Clone L138D7 (1:200) Biolegend #145504
CD90.1-PE Clone HIS51 (1:200) Thermo Fisher #12-0900-81
CD45RB-PE Clone C363-16A (1:200) Biolegend #103308
Ki-67-PE Clone 16A8 (1:200) Biolegend #652404
TGF-β1,-β2,-β3-PE Clone 1D11 (1:200) R&D Systems #IC1835P
Tbet-PE/Cy7 Clone 4B10 (1:200) Biolegend #644824
F4/80-PE/Cy7 Clone BM8 (1:200) Biolegend #123114
Bcl6-PE/Cy7 Clone 7D1 (1:200) Biolegend #358512
Helios-PE/Cy7 Clone 22F6 (1:200) Biolegend #137236
pSTAT5-PE/Cy7 Clone SRBCZY (1:200) Thermo Fisher #25-9010-42
CD8a-APC Clone 53-6.7 (1:200) Biolegend #100712
IFN-γ-APC Clone XMG1.2 (1:200) Biolegend #505810
Foxp3-APC Clone FJK-16s (1:200) Thermo Fisher #17-5773-82
pS6-APC Clone cupk43k (1:200) Therno Fisher #17-9007-42
GL7-APC Clone GL7 (1:200) Biolegend #144606
I-A/I-E-APC Clone M5/114.15.2 (1:200) Biolegend #107614
CD98-APC Clone RL388 (1:200) Biolegend #128210
pS473-APC Clone M89-61 (1:200) BD Biosciences #560343
Granzyme B-APC Clone NGZB (1:200) Thermo Fisher #50-8898-62
IgG (H+L)-APC (1:500) Thermo Fisher #A21244
CD3ε-APC-Cy7 Clone 145-2C11 (1:200) Biolegend #100330
CD86-FITC Clone GL-1 (1:200) Biolegend #105006
Perforin-FITC Clone eBioOMAK-D (1:200) Thermo Fisher #11-9392-82
RORγT-BV421 Clone Q31-378 (1:200) BD Biosciences #562894
CD95-BV421 Clone Jo2 (1:200) BD Biosciences #562633
CD152-BV421 Clone UC10-4B9 (1:200) Biolegend #106312
CD134-BV421 Clone OX-86 (1:200) Biolegend #119411
CD62L-Pacific Blue Clone MEL-14 (1:200) Biolegend #104424
CD25-Pacific Blue Clone PC61 (1:200) Biolegend #102022
TNF-α-Pacific Blue Clone MP6-XT22 (1:200) Biolegend #506318
pmTOR-Pacific Blue Clone MRRBY (1:200) Biolegend #48-9718-42
c-Myc-Pacific Blue Clone D84C12 (1:200) Cell Signalling #14426S
Foxp3-V450 Clone MF23 (1:200) BD Biosciences #561293
CD44-PerCP/Cy5.5 Clone IM7 (1:200) Biolegend #103032
CD86-PerCP Clone GL-1 (1:200) Biolegend #105026
CD45R/B220-BV510 Clone RA3-6B2 (1:200) Biolegend #103248
CD69-BV605 Clone H1.2F3 (1:200) Biolegend #104530
IL-17A-BV605 Clone TC11-18H10 (1:200) BD Biosciences #564169
CD279-BV605 Clone 29F.1A12 (1:200) Biolegend #135220
CD4-BV785 Clone GK1.5 (1:200) Biolegend #100453
CD19-BV785 Clone 6D5 (1:200) Biolegend #115543
Glut1-Alexa Fluor®488 Clone EPR3915 (1:200) Abcam #ab195359
pSMAD3 Ser423, Ser425 Thermo Fisher #44-246G
pAMPK alpha-1,2 (Thr172) Thermo Fisher #44-1150G
Purified anti-mouse CD3ε Clone 145-2C11 Biolegend #100340
Purified anti-mouse CD28 Clone Biolegend #102112
Human CD3/CD28 T Cell activator Stemcell Technologies #10971
Anti-Mouse IFN-γ Clone XMG1.2 BD Biosciences #554408
Biological Samples
Healthy control buffy coat Croix-Rouge Luxembourgeoise N/A
Chemicals, Peptides, and Recombinant Proteins
RPMI 1640 (without L-Glutamine) Lonza #BE12-167F
RMPI 1640 (without glucose, serine, glycine) Teknova #50-190-8105
DMEM (with glucose and L-Glutamine) Lonza #BE12-604F
Hank’s Balanced Salt Solutions Lonza #BE10-543F
SILAC RPMI 1640 Flex Media Gibco #15347143
Seahorse XF base medium without phenol red Agilent Technologies #103335-100
PBS Lonza #BE17-516F
FBS Sigma-Aldrich #TMS-013-B
Penicillin/Streptomycin Gibco #11548876
L-Glutamine Sigma-Aldrich #G3126-100G
2-mercaptoethanol Gibco #11508916
Sodium pyruvate Gibco #12539059
Recombinant human TGF-β R&D Systems #240-B-002
recombinant human IL-2 Miltenyi Biotec #130-120-333
2-Deoxy-D-glucose Sigma-Aldrich #D6134-1G
D-(+)-glucose Sigma-Aldrich #G8270-5KG
Oligomycin A Sigma-Aldrich #75351-5MG
FCCP Sigma-Aldrich #C2920-10MG
Antimycin A Sigma-Aldrich #A8674-25MG
Rotenone Sigma-Aldrich #R8875-1G
Phorbol 12-myristate 13-acetate (PMA) Sigma-Aldrich #P8139-1MG
Calcium Ionophore Sigma-Aldrich #C7522-1MG
N-Acetyl-L-cysteine Sigma-Aldrich #A7250-50G
L-Glutathione reduced Sigma-Aldrich #G4251-10G
Rapamycin Invivogen #tlrl-rap
Rapamycin LC Laboratories N/A
L-(+)-α-Phenylglycine Sigma-Aldrich #237647-25G
4-Hydroxytamoxifen Sigma-Aldrich #H6278-10MG
PKUMDL-WQ-2101 Sigma-Aldrich #SML1970-5MG
L-buthionine-sulfoximine Sigma-Aldrich #B2515-1G
SHIN1 Aobious #AOB36697
Thymidine, [6-3H]-, 5mCi (185MBq) Perkin Elmer # NET355005MC
SYBR™ Fast Green Master Mix Applied Biosystems # 10459604
Corning™ Cell-Tak Cell and Tissue Adhesive Thermo Fisher # 10317081
13C6-glucose Cambridge Isotope Lab # CLM-1396
13C5-L-Glutamine Cambridge Isotope Lab # CLM-1822-H
13C3-serine Cambridge Isotope Lab #CLM-1574-H
GolgiPlug™ BD Biosciences #555029
Cell Trace Violet Thermo Fisher #C34557
Mitotracker Deep Red Thermo Fisher # M22426
Molecular Probes™ Carboxy-H2DCFDA Thermo Fisher #11500146
Molecular Probes™ 2-NBDG Thermo Fisher #11569116
Zombie NIR™ Fixable Viability Kit Biolegend #423106
Saponin Sigma-Aldrich #S4521-25G
Formaldehyde Sigma-Aldrich #252549-1L
Hepes Sigma-Aldrich #H4034-100G
EDTA Sigma-Aldrich #E9884-100G
Polyethylene glycol Sigma-Aldrich #P1458-50ML
Ethanol VWR #20821330
Tween 80 Sigma-Aldrich #P1754-1L
Methanol Sigma-Aldrich #1060351000
Chloroform Sigma-Aldrich #34854-1L-M
Trichloroacetic acid Sigma-Aldrich #T6399-100G
DNAse I Sigma-Aldrich #10104159001
Liberase Sigma-Aldrich #5401020001
Percoll® Sigma-Aldrich #GE17-0891-01
HiSep™ LSM 1077 HiMedia Laboratory #LS001-500ML
Critical Commercial Assays
Naive CD4+ T Cell Isolation Kit Miltenyi Biotec #130-104-453
CD4+ T Cell Isolation Kit Miltenyi Biotec #130-104-454
CD90.1 Microbeads Miltenyi Biotec #130-094-523
CD4+ CD25+ Regulatory T Cell Isolation Kit Miltenyi Biotec #130-091-041
Tumor Dissociation Kit Miltenyi Biotec #130-096-730
CD45 (TIL) Microbeads Miltenyi Biotec #130-110-618
Naive CD4+ T Cell Isolation Kit II, human Miltenyi Biotect #130-094131
Seahorse XFe96 Fluxpak Agilent Technologies #102416-100
Foxp3/Transcription Factor Staining Buffer Set Thermo Fisher #15151976
Fixation/Permeabilization solution kit BD Biosciences #554701
Lyse/Fix Buffer 5x BD Biosciences #558049
Perm buffer III BD Biosciences #558050
QuantiTect Reverse Transcription Kit Qiagen #205314
RNA 6000 Nano Kit Agilent Technologies #5067-1511
NucleoSpin RNA 250 Macherey-Nagel #740 955 250
IFN gamma Mouse Uncoated ELISA Kit Thermo Fisher #88-7314-88
TNF alpha Mouse Uncoated ELISA Kit Thermo Fisher #88-7324-88
Invitrogen ™ IL-2 Mouse Uncoated ELISA Kit Thermo Fisher #15520997
Experimental Models: Cell Lines
B16F10 Dr. Philipp Lang
MC38 ATCC
Experimental Models: Organisms/Strains
Gclcfl/fl : B6 Maketal., 2017 N/A
Foxp3YFP-Cre : B6 The Jackson laboratory #016959
Foxp3eGFP-Cre-ERT2 : B6 The Jackson laboratory #016961
Rag1−/− : B6 The Jackson laboratory #002216
IFNγ−/− : B6 The Jackson laboratory #002287
Deposited Data
RNA-Seq This paper
Oligonucleotides
Gclc:
F: G G CTCTCTG CACCATCACTT
R :GTTAGAGTACCGAAGCGGGG
This paper
Foxp3:
F:CCCATCCCCAGGAGTCTTG
R : ACCAT G ACT AG GG G CACT GTA
This paper
Slc1a4:
F:TGCTCTGGCGTTCATCATCA
R :AGTGAATG CGG CAACCACAA
This paper
Slc1a5:
F :TGG CCAG CAAG ATTGTG GAG AT
R :TTTGCGGGTGAAGAGGAAGT
This paper
HPRT:
F:TCAGTCAACGGGGGACATAAA
R :GGGGCTGTACTGCTTAACCAG
This paper
TBP:
F :G AAG AAC AAT CCAG ACTAG CAG CA
R : CCTTATAG G G AACTT C AC AT C AC AG
This paper
PHGDH:
F: ATG GCCTTCG CAAATCTG C
R :AGTTCAGCTATCAGCTCCTCC
This paper
sgRNA Phgdh
C*U*U*GCCUUGCCUUGCCCAUG
G*G*C*AAGAGCUCACCUUCUUC
U*U*C*UUACAGGCAGAUUCCCC
Synthego N/A
sgRNA Slc1a4
A*C*C*AGGCUGCAAACCACCAG
G*C*A*UCUCGCCCGGGAAGGCC
C*C*U*CAGCGCCGCGCCCAUGC
Synthego N/A
Recombinant DNA
pMIT-Foxp3-CD90.1 Dr. Michael Lohoff
pMIT-CD90.1 Dr. Michael Lohoff
pMIG-RI-STAT5-CA Dr. Michael Lohoff
pMIG-RI Dr. Russell Jones
pMIG-RI-Gclc This paper
pMIG-RI-Smad3 This paper
Software and Algorithms
FlowJo Software Tree Star N/A
Continued
Graphpad Prism GraphPad Software, Inc N/A
Wave Software Agilent N/A
Adobe Illustrator Adobe systems N/A