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. 2020 Jun 1;8:76. doi: 10.1186/s40168-020-00836-7

Table 3.

Taxonomy associated to sequences of glycoside hydrolases belonging to GH13 family (most abundant) and the enriched GH families in heavy fraction samples from SIP metagenome

GH families Sample Proteobacteria Acidobacteria Actinobacteria Planctomycetes Others
GH13 Cultivated 66.8 (2605) 21.8 (827) 0.9 (36) 0.09 (1) 10.4 (51.4)
GH13_SIP Control 20.1 (128) 23.4 (148) 25.6 (162) 0.1 (4) 31 (196)
EPS 17.9 (89) 24.7 (125) 20.4 (95) 2.9 (13) 34 (172)
Labeled 17.2 (127) 4 (30) 45.7 (333) 5.7 (42) 27 (201)
GH109 Control 11 (22) 45 (92) 12 (26) 2 (4) 31 (68)
EPS 7 (19) 26 (76) 7 (18) 21 (60.8) 40 (111.6)
Labeled 7 (34) 9 (48) 13 (62) 29 (150) 42 (217)
GH117 Control 0 (0) 33 (1) 33 (1) 0 (0) 33 (1)
EPS 0 (0) 0 (0) 17 (1) 0 (0) 38 (5)
Labeled 9 (1) 0 (0) 27 (3) 0 (0) 64 (7)
GH50 Control 100 (3) 0 (0) 0 (0) 0 (0) 0 (0)
EPS 100 (2) 0 (0) 0 (0) 0 (0) 0 (0)
Labeled 8 (2) 0 (0) 0 (0) 0 (0) 92 (24)
GH32 Control 0 (0) 44 (4) 11 (1) 0 (0) 44 (4)
EPS 0 (0) 11 (2) 5 (1) 5 (1) 79 (15)
Labeled 6 (2) 14 (5) 3 (1) 9 (3) 69 (24)
GH17 Control 75 (9) 0 (0) 0 (0) 0 (0) 25 (3)
EPS 43 (3) 0 (0) 0 (0) 0 (0) 57 (4)
Labeled 44 (8) 0 (0) 0 (0) 0 (0) 56 (10)
GH71 Control 0 (0) 0 (0) 100 (1) 0 (0) 0 (0)
EPS 0 (0) 25 (1) 50 (2) 0 (0) 25 (1)
Labeled 22 (5) 0 (0) 35 (8) 0 (0) 43 (10)

Average percentage from 4 replicates (total number of sequences)