Table 2.
Method | Consortium | South Asian Women | |||||||
---|---|---|---|---|---|---|---|---|---|
START | UK Biobank | ||||||||
Beta | SE | P-value | AUC | Beta | SE | P-value | AUC | ||
P + T | Mahajan et al., 2014 | 0.445 | 0.08 | 8.7 × 10−9 | 0.62 | 0.423 | 0.14 | 0.003 | 0.61 |
Scott et al., 2017 | 0.370 | 0.07 | 7.86 × 10−7 | 0.60 | 0.280 | 0.14 | 0.05 | 0.57 | |
GraBLD | Mahajan et al., 2014 | 0.465 | 0.08 | 1.8 × 10−9 | 0.62 | 0.520 | 0.14 | 0.0003 | 0.64 |
Scott et al., 2017 | 0.317 | 0.07 | 1.61 × 10−5 | 0.59 | 0.388 | 0.14 | 0.006 | 0.61 | |
LDpred | Mahajan et al., 2014 | 0.461 | 0.07 | 2.18 × 10−9 | 0.62 | 0.527 | 0.14 | 0.0002 | 0.65 |
Scott et al., 2017 | 0.347 | 0.07 | 4.05 × 10−6 | 0.59 | 0.382 | 0.14 | 0.006 | 0.61 |
Results are from univariate association tests with GDM (LD from 1000 Genomes). Abbreviations: AUC, Area under the curve; GraBLD, Gradient boosted and LD adjusted; NA, Non applicable; P + T, pruning and thresholding; PRS, Polygenic risk score; SE, Standard error; START, South Asian Birth Cohort.