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. 2020 Jun 2;10:8941. doi: 10.1038/s41598-020-65360-y

Table 2.

GDM association results of the best P + T, LDpred and GraBLD PRSs in South Asian women from the START and UK Biobank.

Method Consortium South Asian Women
START UK Biobank
Beta SE P-value AUC Beta SE P-value AUC
P + T Mahajan et al., 2014 0.445 0.08 8.7 × 10−9 0.62 0.423 0.14 0.003 0.61
Scott et al., 2017 0.370 0.07 7.86 × 10−7 0.60 0.280 0.14 0.05 0.57
GraBLD Mahajan et al., 2014 0.465 0.08 1.8 × 10−9 0.62 0.520 0.14 0.0003 0.64
Scott et al., 2017 0.317 0.07 1.61 × 10−5 0.59 0.388 0.14 0.006 0.61
LDpred Mahajan et al., 2014 0.461 0.07 2.18 × 10−9 0.62 0.527 0.14 0.0002 0.65
Scott et al., 2017 0.347 0.07 4.05 × 10−6 0.59 0.382 0.14 0.006 0.61

Results are from univariate association tests with GDM (LD from 1000 Genomes). Abbreviations: AUC, Area under the curve; GraBLD, Gradient boosted and LD adjusted; NA, Non applicable; P + T, pruning and thresholding; PRS, Polygenic risk score; SE, Standard error; START, South Asian Birth Cohort.