Schematic of a mouse (a) implanted with EEG/EMG and glass fiber targeting the DR in the experimental protocol to test CO2 arousal, as shown in b. The 593 nm laser is on for 20 sec before and 10 sec after each 30 sec period of CO2 stimulation during the Laser-ON condition. Panels c, d show the EEG power spectrum, EEG, EMG, CO2 level in the chamber, and respiration during representative trials of CO2 exposure in Laser-OFF (c) and Laser-ON (d) conditions. The mouse awoke in 17 sec in response to the rising CO2 during Laser-OFF in c, as demonstrated by desynchronization of the EEG (decrease of power in lower frequencies; shown in top two traces), increase in EMG (third trace) and sudden increase in the rate and volume of ventilation at the time of EEG arousal (lower trace) in c. With Laser-ON (d), the mouse did not wake up to the CO2 stimulus as can be seen by the presence of synchronized EEG, and minimal EMG activity, during the steadily increasing respiration in response to CO2 (there are brief artifacts in the plethysmograph air flow trace at the shift in gas mixtures). Panels e–g show graphically the effect of acute silencing of the DRSert neurons on the latency of CO2 arousal (mean ± SEM) (e) in Laser-OFF and Laser-ON conditions (DRSert ArchT, n = 6; DRWT ArchT, n = 3), and the mice in the DRSert group are shown using line graphs in both Laser conditions. The survival curves (f) show the reduction in arousal (mean ± SEM) across the CO2 exposure. Panel g shows that ~40% of the mice with silencing of DRSert neurons did not awaken within 30 sec (F3,14 = 49.41, P < 0.001) of onset of CO2 exposure, whereas without the laser the same mice woke up in every trial, and these were statistically compared using the one-way ANOVA followed by multiple comparisons for treatment groups. Data in e–g are presented as mean values ± SEM. **P < 0.01; ***P < 0.001; one-way (e, g) or two-way ANOVA (f).