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. Author manuscript; available in PMC: 2020 Sep 1.
Published in final edited form as: Hum Mutat. 2019 Jun 23;40(9):1261–1269. doi: 10.1002/humu.23794

Table 3.

MSE for prediction of log2 AR in vivo and in vitro

Method in vivo in vitro

MSE Spearman’s rho MSE Spearman’s rho
DNN 1.30548 0.05084 1.00574 0.09330

RF 1.30418 0.34763 0.95797 0.40759
RF + DNN 1.26058 0.31701 0.96434 0.41124

XGBoost 1.40212 0.35378 0.92402 0.50614
XGBoost + DNN 1.29030 0.08718 0.92394 0.50534

LR 1.22814 0.38239 0.76193 0.50903
LR + DNN 1.20719 0.37599 0.76509 0.50966

RF + XGBoost 1.29381 0.36163 0.91377 0.49302
RF + XGBoost + DNN 1.24926 0.33593 0.91547 0.49673

RF + LR 1.19564 0.38680 0.76650 0.50660
RF + LR + DNN 1.16961 0.38827 0.77075 0.50783

XGBoost + LR 1.22412 0.38288 0.81491 0.51463
XGBoost + LR + DNN 1.20390 0.37737 0.81552 0.51472

RF + XGBoost + LR 1.19216 0.38758 0.81764 0.51270
RF + XGBoost + LR + DNN 1.16580 0.39046 0.81891 0.51317