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. Author manuscript; available in PMC: 2020 Jun 2.
Published in final edited form as: Curr Opin Virol. 2019 Mar 16;34:149–159. doi: 10.1016/j.coviro.2019.02.004

Table 1.

Properties of representative VH1–69 antiviral antibodies.

Virus Antibody VH1–69 allele Genetic features CDRH3 length1 Epitope Recognition properties Neutralization breadth PDB Reference
Influenza CR6261 F Hydrophobic Ile-Phe (IF) sequence at the tip of CDRH2 [Met-Phe (MF) for F10] with a conserved Tyr (Y) in CDRH3 to give an IFY motif 12 HA stem Heavy chain only binding; CDRH2 dominant Influenza A group 1 3GBM [27]
F10 F 15 3FKU [11]
CR9114 F 12 Heavy chain dominant; CDRH2 dominant Influenza A group 1 and 2 viruses 4FQI [28]
27F3 F 14 5WKO [29••]
2G1 F Hydrophobic IF (FF for F045–092) at the tip of CDRH2 11 HA head RBS Heavy chain dominant; CDRH2 and H3 mediated Influenza A group 1 4HG4 [32]
8M2 F 14 4HFU [32]
F045–092 F 23 Heavy chain only binding; CDRH3 dominant Influenza A (group 1 and 2) 4O58; 4O5I [30,70]
HCV AR3A F Hydrophobic I/V-P-X-F motif at the tip of CDRH2 for AR3- and HC84-class antibodies; T/S-P-I-F/S motif for HEPC3/74-class antibodies 18 E2 AR3 Heavy chain only binding; CDRH2 and CDRH3 mediated Broadly neutralizing 6BKB [15,60••]
AR3B F 19 6BKC [15,60••]
AR3C F 18 4MWF [15,44,60••]
AR3D F 22 6BKD [15,60••]
HEPC3 F 17 6MEI; 6MEJ; 6MEK [47••]
HEPC74 F 18 6MEH [47••]
HC84–1 F 10 E2 domain D Heavy chain dominant; CDRH2 dominant Broadly neutralizing 4JZN [45]
HC84–27 F 10 4JZO [45]
HC84–26 F 10 5ERW [46]
HIV-1 4E10 L Hydrophobic LL at the tip of CDRH2 18 gp41 MPER and membrane lipid Heavy chain dominant; CDRH2 dominant Broadly neutralizing 2FX7, 4XCF [51,53,75,75]
HK20 F Hydrophobic IF at the tip of CDRH2 13 gp41 HR1 Heavy chain dominant; CDRH2 dominant Less breadth and potency 2XRA [56]
D5 F 10 2CMR [55]
17b L Hydrophobic IL at the tip of CDRH2 19 gp120 coreceptor-binding site Heavy chain dominant; CDRH2 and H3 mediated Limited neutralizing 1RZ8 1GC1, 1G9N, 1G9M [20,77,78]
VRC13 F Polar ST at the tip of CDRH2 21 gp120 CD4bs CDRH3 dominant Broadly neutralizing 4YDJ [19]
1

Based on Kabat numbering, in which the CDRH3 length is 2 amino acids shorter than in the IMGT definition.