Table 1.
Properties of representative VH1–69 antiviral antibodies.
Virus | Antibody | VH1–69 allele | Genetic features | CDRH3 length1 | Epitope | Recognition properties | Neutralization breadth | PDB | Reference |
---|---|---|---|---|---|---|---|---|---|
Influenza | CR6261 | F | Hydrophobic Ile-Phe (IF) sequence at the tip of CDRH2 [Met-Phe (MF) for F10] with a conserved Tyr (Y) in CDRH3 to give an IFY motif | 12 | HA stem | Heavy chain only binding; CDRH2 dominant | Influenza A group 1 | 3GBM | [27] |
F10 | F | 15 | 3FKU | [11] | |||||
CR9114 | F | 12 | Heavy chain dominant; CDRH2 dominant | Influenza A group 1 and 2 viruses | 4FQI | [28] | |||
27F3 | F | 14 | 5WKO | [29••] | |||||
2G1 | F | Hydrophobic IF (FF for F045–092) at the tip of CDRH2 | 11 | HA head RBS | Heavy chain dominant; CDRH2 and H3 mediated | Influenza A group 1 | 4HG4 | [32] | |
8M2 | F | 14 | 4HFU | [32] | |||||
F045–092 | F | 23 | Heavy chain only binding; CDRH3 dominant | Influenza A (group 1 and 2) | 4O58; 4O5I | [30,70] | |||
HCV | AR3A | F | Hydrophobic I/V-P-X-F motif at the tip of CDRH2 for AR3- and HC84-class antibodies; T/S-P-I-F/S motif for HEPC3/74-class antibodies | 18 | E2 AR3 | Heavy chain only binding; CDRH2 and CDRH3 mediated | Broadly neutralizing | 6BKB | [15,60••] |
AR3B | F | 19 | 6BKC | [15,60••] | |||||
AR3C | F | 18 | 4MWF | [15,44,60••] | |||||
AR3D | F | 22 | 6BKD | [15,60••] | |||||
HEPC3 | F | 17 | 6MEI; 6MEJ; 6MEK | [47••] | |||||
HEPC74 | F | 18 | 6MEH | [47••] | |||||
HC84–1 | F | 10 | E2 domain D | Heavy chain dominant; CDRH2 dominant | Broadly neutralizing | 4JZN | [45] | ||
HC84–27 | F | 10 | 4JZO | [45] | |||||
HC84–26 | F | 10 | 5ERW | [46] | |||||
HIV-1 | 4E10 | L | Hydrophobic LL at the tip of CDRH2 | 18 | gp41 MPER and membrane lipid | Heavy chain dominant; CDRH2 dominant | Broadly neutralizing | 2FX7, 4XCF | [51,53,75,75] |
HK20 | F | Hydrophobic IF at the tip of CDRH2 | 13 | gp41 HR1 | Heavy chain dominant; CDRH2 dominant | Less breadth and potency | 2XRA | [56] | |
D5 | F | 10 | 2CMR | [55] | |||||
17b | L | Hydrophobic IL at the tip of CDRH2 | 19 | gp120 coreceptor-binding site | Heavy chain dominant; CDRH2 and H3 mediated | Limited neutralizing | 1RZ8 1GC1, 1G9N, 1G9M | [20,77,78] | |
VRC13 | F | Polar ST at the tip of CDRH2 | 21 | gp120 CD4bs | CDRH3 dominant | Broadly neutralizing | 4YDJ | [19] |
Based on Kabat numbering, in which the CDRH3 length is 2 amino acids shorter than in the IMGT definition.