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. 2020 Jun 2;6(1):veaa026. doi: 10.1093/ve/veaa026

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© The Author(s) 2020. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 1. — (A) Mid-point rooted ML phylogenetic Tree of 154 genome sequences isolated globally. Sequences from Kenya are highlighted with red tips representing sequences from 2017 outbreak and blue tips representing the 2013/4 outbreak sequences. The annotations shown are represented by; C, Cosmopolitan genotype; C-I, Cosmopolitan-I lineage; C-II, Cosmopolitan-II lineage; C-III, Cosmopolitan-III lineage; AA, Asian-American genotype; AI, Asian I genotype; AII, Asian II genotype; AM, American genotype. (B) ML phylogenetic tree generated using 129 C/PrM gene sequences of the Cosmopolitan genotype only. The additional Kenyan sequences that were included in this dataset are colored with blue tip-labels.