Table 4. Top 20 significantly enriched pathways as determined by Gene Ontology (GO) enrichment analysis in dithranol-treated lesional skin after 6 days compared to baseline from 15 patients with psoriasis.
(GO was done using Cytoscape software [Bindea et al., 2009; Shannon et al., 2003]; a.o. = among others).
| GOID | GO term | P-Value | % Associated Genes | Associated genes found |
|---|---|---|---|---|
| GO:0001533 | Cornified envelope | 3.8E-12 | 10.45 | FLG, HRNR, KRT2, LCE1A, LCE1C, LCE2D, SPRR2F |
| GO:0031424 | Keratinization | 7.7E-12 | 3.93 | CASP14, FLG, HRNR, KRT2, KRT73, LCE1A, LCE1C, LCE2D, SPRR2F |
| GO:0030216 | Keratinocyte differentiation | 79.0E-12 | 3.02 | CASP14, FLG, HRNR, KRT2, KRT73, LCE1A, LCE1C, LCE2D, SPRR2F |
| GO:0018149 | Peptide cross-linking | 300.0E-12 | 9.84 | FLG, KRT2, LCE1A, LCE1C, LCE2D, SPRR2F |
| GO:0070268 | Cornification | 12.0E-9 | 5.31 | CASP14, FLG, KRT2, KRT73, LCE1A, SPRR2F |
| GO:0004168 | Receptor CXCR2 binds ligands CXCL1 to 7 | 1.0E-6 | 33.33 | CXCL5, CXCL8, PPBP |
| GO:0042379 | Chemokine receptor binding | 5.4E-6 | 6.25 | CXCL5, CXCL8, DEFB4A, PPBP |
| GO:0045236 | CXCR chemokine receptor binding | 6.0E-6 | 18.75 | CXCL5, CXCL8, PPBP |
| GO:0061436 | Establishment of skin barrier | 18.0E-6 | 13.04 | FLG, FLG2, HRNR |
| GO:0033561 | Regulation of water loss via skin | 21.0E-6 | 12.00 | FLG, FLG2, HRNR |
| GO:0004657 | IL-17 signaling pathway | 21.0E-6 | 4.30 | CXCL5, CXCL8, DEFB4A, DEFB4B |
| GO:0007874 | Keratin filament formation | 21.0E-6 | 4.17 | FLG, KRT2, KRT73, SPRR2F |
| GO:0030593 | Neutrophil chemotaxis | 21.0E-6 | 4.17 | CXCL5, CXCL8, PPBP, TREM1 |
| GO:1990266 | Neutrophil migration | 27.0E-6 | 3.85 | CXCL5, CXCL8, PPBP, TREM1 |
| GO:0071621 | Granulocyte chemotaxis | 38.0E-6 | 3.31 | CXCL5, CXCL8, PPBP, TREM1 |
| GO:1902622 | Regulation of neutrophil migration | 45.0E-6 | 7.50 | CXCL5, CXCL8, PPBP |
| GO:0071622 | Regulation of granulocyte chemotaxis | 71.0E-6 | 5.66 | CXCL5, CXCL8, PPBP |
| GO:0030104 | Water homeostasis | 130.0E-6 | 4.00 | FLG, FLG2, HRNR |
| GO:0002690 | Positive regulation of leukocyte chemotaxis | 120.0E-6 | 3.30 | CXCL5, CXCL8, PPBP |
| GO:0004867 | Serine-type endopeptidase inhibitor activity | 79.0E-6 | 3.00 | SERPINB1, SERPINB12, SPINK7 |