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. 2020 May 19;26(6):1295–1307. doi: 10.1007/s12298-020-00823-0

Table 2.

QTLs for spike traits detected in four environments of the 10-A × BE89 mapping population

Trait Name QTL Environment Interval LOD PVE (%) Add Dom Distance (cM)
SL QSl.sicau-4A E1 977534_37-3020781_18 18.6 36.6 1.6 0.4 0.54
E2 4.8 11.5 1.1 1.2
QSl.sicau-7B.1 E3 2329983_25-1136658_10 10.7 8.8 −0.7 -0.1 0.72
QSl.sicau-7B.2 E3 4260822_10-4909531_26 17.7 15.9 1 0.1 1
TSS QTss.sicau-4A.1 E2 977534_37-3020781_18 26.2 37.8 2.3 1.4 0.54
QTss.sicau-4A.2 E1 3028945_17-1072050_42 24.6 30.1 2.5 0.3 0.86
E4 19.6 30.2 2.1 0.7
QTss.sicau-4A.3 E3 1261191_36-4993624_22 5.4 13.8 1.2 0.5 0.78
QTss.sicau-6A E1 2252585_8-1007034_24 12.8 13.3 −1.7 0.2 2.06
QTss.sicau-7A E2 1231136_19-1008272_10 7 8.2 1.1 0.1 5.06
KNS QKns.sicau-2D E3 989323_53-1069928_18 4.7 9.1 4.1 −0.8 13.6
QKns.sicau-4A E1 977534_37-3020781_18 12.6 28.2 7.9 2.5 0.54
E2 14.5 32.2 7.1 6.3
E4 6.6 14.6 5.5 2.9
TKW QTkw.sicau-4A E2 3028945_17-1072050_42 7.2 18.1 4.6 2.7 0.86

Abbreviations: SL spike length; TSS total spikelet per spike; KNS kernel number per spike; TKW thousand-kernel weight; LOD logarithm of odds; PVE phenotypic variation estimated from marker regression against the phenotype; Add additive effect; Dom dominant effect; cM centimorgan; E1 Wenjiang where F2 population were planted in 2016; E2 Wenjiang where F2:3 lines were planted in 2017; E3 Chongzhou where F2:3 lines were planted in 2017; E4 Ya’an where F2:3 lines were planted in 2017