Table 3.
Pairwise percent of nucleotide identities between the genomic components and amino acid sequence identities of encoded genes from the ToLCNDV-[IN:WM:Ban:18] with the components and genes of selected begomoviruses available in the databases
| Begomovirusc | Genomea | IRa | Gene (percentage amino acid sequence identity) | |
|---|---|---|---|---|
| BV1b | BC1b | |||
| ToLCNDV-Cucurbits (9) | 85.2–95.8 | 78.0–98.0 | 86.5–97.6 | 93.5–95.3 |
| ToLCNDV-Potato (6) | 88.3–88.6 | 87.0–89.0 | 92.9–94.4 | 93.2–93.9 |
| ToLCNDV-tomato (13) | 83.2–93.9 | 85.4–99.1 | 83.5–97.7 | 85.7–94.6 |
| ToLCNDV-Chilli (4) | 86.2–93.9 | 93.3–96.7 | 93.2–97.6 | 89.6–93.5 |
| ToLCPaV-Cucurbits (12) | 74.4–75.3 | 76.4–77.0 | 78.7–79.8 | 88.6–90.3 |
| ToLCPaV-Tomato (3) | 75.0–76.1 | 69.7–73.9 | 79.1–79.8 | 89.6–90.7 |
| SLCCNV-Pum (4) | 72.3–73.1 | 73.7–75.9 | 72.3–73.1 | 85.4–87.9 |
| ToLCNDV-okra (1) | 91.1 | 95.1 | 94.7 | 94.3 |
| MYMIV (2) | 58.6–59.2 | 54.4–62.3 | 28.0–28.8 | 45.2–45.7 |
BV1 nuclear shuttle protein gene, BC1 movement protein gene
aNucleotide identity
bAmino acid identity
cThe species are indicated as tomato leaf curl New Delhi virus (ToLCNDV), tomato leaf curl Palampur virus (ToLCPaV), squash leaf curl China virus (SLCCNV), and mungbean yellow Mosaic Indian virus (MYMIV). For each column, the highest value is underlined