Table 1.
Summary of reference based assembled transcripts from RNA-Seq of the susceptible and resistant genotypes of Arachis hypogea at control and infected stages
| SI | RI | SC | RC | |
|---|---|---|---|---|
| Number of transcripts | 14,916,661 | 17,502,719 | 17,336,240 | 36,625,310 |
| RNA-Seq length (bp) | 2,388,143,923 | 2,761,143,610 | 2,928,728,266 | 5,127,297,546 |
| Average transcript length (bp) | 160 | 158 | 169 | 140 |
| Total read counts after quality filtration | 12,669,594 (84.94%) | 14,779,667 (84.44%) | 15,038,010 (86.74%) | 31,262,640 (85.36%) |
| Number of uniquely mapped reads | 4,999,181 (39.46%) | 10,218,232 (69.14%) | 10,728,674 (71.34%) | 19,233,708 (61.52%) |
| Number of reads mapped to multiple loci | 2,099,015 (16.57%) | 3,747,309 (25.35%) | 3,757,635 (24.99%) | 9,796,877 (31.34%) |
| Average contig length after mapping (bp) | 137 | 147 | 152 | 125 |