TABLE 2.
Genetic effects of SNPs within annotated genes.
| Scaffold | Position | Gene | Full name | Gene ID | Allele | High-altitude population |
Low-altitude population |
Difference (%) |
|||
| Area | Width | Area | Width | Area | Width | ||||||
| 1 | 22082784 | CIPK3 | CBL-INTERACTING PROTEIN KINASE 3 | POPTR_0019s08760 | GG | 1.677 | 1.107 | 1.598 | 1.054 | 4.96 | 5.05 |
| 1 | 28403445 | SAG101 | SENESCENCE-ASSOCIATED CARBOXYLESTERASE 101 | POPTR_0001s29790 | AG | 1.760 | 1.169 | 1.644 | 1.085 | 7.04 | 7.72 |
| 1 | 43033561 | CRPK1 | COLD-RESPONSIVE PROTEIN KINASE 1 | POPTR_0001s42950 | AG | 1.66 | 1.104 | 1.585 | 1.044 | 5.27 | 5.69 |
| 2 | 9660163 | AR781 | AR781 | POPTR_0002s13000 | TT | 1.750 | 1.169 | 1.625 | 1.070 | 7.75 | 9.30 |
| 2 | 6092252 | DIS3L2 | DIS3-like EXONUCLEASE 2 | POPTR_0002s08690 | GG | 1.823 | 1.212 | 1.598 | 1.051 | 14.08 | 15.33 |
| 4 | 22733081 | LRR kinase | LEUCINE RICH REPEAT kinase | POPTR_0004s24030 | TC | 1.723 | 1.136 | 1.547 | 1.014 | 11.38 | 12.09 |
| 12 | 14701685 | LAP1 | PROTEIN LAP1 | POPTR_0012s15030 | CC | 1.656 | 1.096 | 1.601 | 1.057 | 3.43 | 3.72 |
| 14 | 5416939 | COP11 | COP9 signalosome complex subunit 1 | POPTR_0014s07160 | AT | 1.733 | 1.138 | 1.644 | 1.084 | 5.39 | 4.92 |
| 15 | 4747203 | PIN1 | PIN-FORMED1 | POPTR_0015s04570 | GG | 1.468 | 0.964 | 1.610 | 1.075 | 9.64 | 11.46 |
| 15 | 8379891 | CDK-like | CYCLIN-DEPENDENT KINASE-LIKE | POPTR_0015s07250 | TT | 1.475 | 0.970 | 1.530 | 1.007 | 3.75 | 3.90 |
| 18 | 9890878 | CAK1AT | CDK-ACTIVATING KINASE | POPTR_0018s09000 | TT | 1.682 | 1.117 | 1.611 | 1.065 | 4.41 | 4.89 |
| 379 | 2531 | Stress-antifung | Salt stress response/antifungal | POPTR_0379s00200 | TC | 1.701 | 1.129 | 1.615 | 1.069 | 5.33 | 5.64 |
| 1 | 36327299 | NAP5 | NON-INTRINSIC ABC PROTEIN 5 | POPTR_0001s37340 | TT | 1.610 | 1.059 | 1.478 | 0.954 | 8.93 | 11.03 |
| 1 | 35770384 | JMT | JASMONIC ACID CARBOXYL METHYLTRANSFERASE | POPTR_0001s36950 | CC | 1.619 | 1.063 | 1.444 | 0.942 | 12.05 | 12.90 |
| 2 | 21186580 | BHLH76 | TRANSCRIPTION FACTOR BHLH76 | POPTR_0002s23650 | TT | 1.656 | 1.096 | 1.455 | 0.942 | 13.84 | 16.38 |
| 2 | 9487450 | Protein kinase | PROTEIN KINASE FAMILY PROTEIN | POPTR_0002s12740 | GG | 1.656 | 1.096 | 1.455 | 0.942 | 13.84 | 16.38 |
| 3 | 18093953 | IIB | TRANSCRIPTION FACTOR IIB | POPTR_0003s19330 | GG | 1.581 | 1.044 | 1.506 | 0.987 | 4.94 | 5.79 |
| 5 | 20022064 | SCL1 | SCARECROW-LIKE1 | POPTR_0005s20890 | CT | 1.642 | 1.081 | 1.564 | 1.031 | 4.97 | 4.86 |
| 6 | 10067699 | EIN2 | ETHYLENE-INSENSITIVE PROTEIN 2 | POPTR_0006s12900 | AG | 1.596 | 1.049 | 1.542 | 1.011 | 3.51 | 3.79 |
| 7 | 152674 | IIIC63 | TRANSCRIPTION FACTOR IIIC63 | POPTR_0007s00430 | TT | 1.620 | 1.069 | 1.551 | 1.023 | 4.43 | 4.46 |
| 10 | 11244085 | Remorin | Remorin family protein | POPTR_0010s10830 | AA | 1.609 | 1.058 | 1.402 | 0.902 | 14.74 | 17.28 |
| 11 | 17887288 | JMJ18 | JUMOJI DOMAIN-CONTAINING PROTEIN 18 | POPTR_0011s15840 | GG | 1.633 | 1.080 | 1.523 | 0.999 | 7.22 | 8.03 |
| 16 | 13960977 | PIN-LIKES | PIN-FORMED LIKES | POPTR_0016s14840 | GG | 1.642 | 1.086 | 1.517 | 1.001 | 8.23 | 8.48 |