TABLE 1.
Bacterial genomes utilized in these analysesa
| Strain designation (abbreviation) | Isolate source | Genome status | Source or reference |
|---|---|---|---|
| S. hyicus isolate from swine | |||
| ATCC 11249 (ATCC) | Swine exudative epidermitis | Finished | 34 |
| S. agnetis isolates from chickens | |||
| 1416 | Broiler femoral BCO lesion; Arkansas broiler commercial farm | Finished | This study |
| 722_230714_2_5_spleen (NEDS) | Broiler spleen, deceased; Denmark | Draft | 33 |
| 722_260714_1_8_heart (NDYM) | Broiler heart, deceased; Denmark | Draft | 33 |
| 723_310714_2_2_spleen (NEFX) | Broiler spleen, deceased; Denmark | Draft | 33 |
| 908 | Broiler femoral BCO lesion; UA research farm | Finished | 26 |
| S. agnetis isolates from bovine | |||
| 12B | Buffalo milk | None | |
| 1379 | Bovine mammary gland/milk | Finished | This study |
| 1383 | Bovine mammary gland/milk | Draft | This study |
| 1384 | Bovine mammary gland/milk | Draft | This study |
| 1385 | Bovine teat skin | Draft | This study |
| 1387 | Bovine mammary gland/milk | Draft | This study |
| 1389 | Bovine inguinal skin | Draft | This study |
| 1390 | Bovine mammary gland/prepartum mammary gland secretion | Draft | This study |
| 1391 | Bovine mammary gland/milk | Draft | This study |
| 1392 | Bovine mammary gland/milk | Draft | This study |
| 33 | Bovine | Draft | None |
| 3682 | Bovine milk | Draft | None |
| 43 | Bovine | Draft | None |
| 59 (59a) | Bovine | Draft | None |
| 59 (59b) | Bovine | Draft | None |
| 6 | Bovine | Draft | None |
| CBMRN 20813338 (CBMRN) | Bovine mammary gland/milk | Draft | 32 |
| DSM_23656 | Bovine mastitic milk | Draft | None |
| SNUC_1371 | Holstein clinical mastitis | Draft | 72 |
| SNUC_1383 | Holstein clinical mastitis | Draft | 72 |
| SNUC_2265 | Holstein subclinical mastitis | Draft | 72 |
| SNUC_2493 | Holstein subclinical mastitis | Draft | 72 |
| SNUC_3261 | Holstein subclinical mastitis | Draft | 72 |
| SNUC_3610 | Holstein subclinical mastitis | Draft | 72 |
| SNUC_3836 | Holstein subclinical mastitis | Draft | 72 |
| SNUC_4051 | Holstein subclinical mastitis | Draft | 72 |
| SNUC_4805 | Holstein subclinical mastitis | Draft | 72 |
| SNUC_5151 | Holstein subclinical mastitis | Draft | 72 |
| SNUC_5631 | Holstein subclinical mastitis | Draft | 72 |
| SNUC_719 | Holstein subclinical mastitis | Draft | 72 |
| SNUC_725 | Holstein subclinical mastitis | Draft | 72 |
a
Genomes are separated by species designation and host source. For each genome, the isolate designation is given, as well as our abbreviation for this manuscript where indicated. The isolate source indicates tissue or sample source for the bacterial isolate. Genome status indicates whether the genome is considered finished or draft. Citation is the publication source. Further information on the genome assemblies is provided in Table S1 in the supplemental material.