TABLE 1.
Genes characterized and discussed in this study
Protein category and gene | Protein | CAZy assignment | Product | Size (kDa) |
---|---|---|---|---|
Extracellular proteins | ||||
pamy_2972 | PelA | PL3 | Pectate lyase | 20.7 |
pamy_4343 | PelB | PL1 | Pectate lyase | 48.0 |
pamy_1763 | PelC | PL9 | Pectate lyase | 43.3 |
pamy_4669 | PelD | PL10 | Pectate lyase | 31.6 |
pamy_2278 | Pnl | PL1 | Pectin lyase | 35.2 |
pamy_4060 | Pae | CE12 | Pectin acetylesterase | 38.1 |
Cytoplasmic proteins | ||||
pamy_1066 | YteR | GH105 | Unsaturated galacturonidase | 42.2 |
pamy_4272 | YteZ | GH105 | Unsaturated galacturonidase | 42.1 |
pamy_5356 | YesR | GH105 | Unsaturated RG hydrolase | 39.2 |
pamy_4273 | Pem | CE8 | Pectin methylesterase | 51.0 |
pamy_82 | Peh | GH28 | Polygalacturonase | 58.7 |