Table 2.
The top 15 most represented GO terms of up- and down-regulated genes for the A genome of F1 vs. B. rapa in the biological process category
| GO | Term | Anno-tated | Sig-nificant | Expe-cted | Fisher | FDR | Level | |
|---|---|---|---|---|---|---|---|---|
| UP | GO:0044275 | Cellular carbohydrate catabolic process | 92 | 25 | 6.75 | 6.30E-09 | 2.89E-05 | 5 |
| GO:0009251 | Glucan catabolic process | 65 | 20 | 4.77 | 2.00E-08 | 4.59E-05 | 7 | |
| GO:0044247 | Cellular polysaccharide catabolic process | 67 | 20 | 4.91 | 3.60E-08 | 5.50E-05 | 6 | |
| GO:0003002 | Regionalization | 247 | 43 | 18.11 | 9.10E-08 | 9.17E-05 | 5 | |
| GO:0007389 | Pattern specification process | 292 | 48 | 21.41 | 1.00E-07 | 9.17E-05 | 4 | |
| GO:0048513 | Organ development | 1389 | 152 | 101.84 | 2.50E-07 | 0.000191 | 4 | |
| GO:0009888 | Tissue development | 727 | 91 | 53.3 | 3.10E-07 | 0.000203 | 4 | |
| GO:0010065 | Primary meristem tissue development | 16 | 9 | 1.17 | 4.30E-07 | 0.000246 | 5 | |
| GO:0016553 | Base conversion or substitution editing | 13 | 8 | 0.95 | 7.50E-07 | 0.000335 | 7 | |
| GO:0006073 | Cellular glucan metabolic process | 313 | 48 | 22.95 | 8.60E-07 | 0.000335 | 6 | |
| GO:0044042 | Glucan metabolic process | 313 | 48 | 22.95 | 8.60E-07 | 0.000335 | 6 | |
| GO:0048731 | System development | 2528 | 246 | 185.34 | 9.00E-07 | 0.000335 | 4 | |
| GO:0048508 | Embryonic meristem development | 48 | 15 | 3.52 | 9.50E-07 | 0.000335 | 4 | |
| GO:0008283 | Cell proliferation | 176 | 32 | 12.9 | 1.50E-06 | 0.000491 | 3 | |
| GO:0007169 | Transmembrane receptor protein tyrosine kinase signaling pathway | 86 | 20 | 6.31 | 3.00E-06 | 0.000917 | 7 | |
| DOWN | GO:0006950 | Response to stress | 4318 | 714 | 457.6 | < 1E-30 | < 1E-30 | 3 |
| GO:1901700 | Response to oxygen-containing compound | 2498 | 473 | 264.72 | < 1E-30 | < 1E-30 | 4 | |
| GO:0010200 | Response to chitin | 213 | 98 | 22.57 | < 1E-30 | < 1E-30 | 5 | |
| GO:0006952 | Defense response | 1603 | 336 | 169.88 | < 1E-30 | < 1E-30 | 4 | |
| GO:0010243 | Response to organo-nitrogen compound | 250 | 103 | 26.49 | < 1E-30 | < 1E-30 | 4 | |
| GO:0050896 | Response to stimulus | 7441 | 1045 | 788.56 | < 1E-30 | < 1E-30 | 2 | |
| GO:0042221 | Response to chemical | 4025 | 637 | 426.55 | < 1E-30 | < 1E-30 | 3 | |
| GO:1901698 | Response to nitrogen compound | 351 | 118 | 37.2 | < 1E-30 | < 1E-30 | 4 | |
| GO:0001101 | Response to acid chemical | 1916 | 358 | 203.05 | 1.50E-29 | 6.87E-26 | 4 | |
| GO:0009607 | Response to biotic stimulus | 1248 | 252 | 132.26 | 1.90E-25 | 4.35E-22 | 3 | |
| GO:0043207 | Response to external biotic stimulus | 1238 | 248 | 131.2 | 1.60E-24 | 1.83E-21 | 4 | |
| GO:0051707 | Response to other organism | 1238 | 248 | 131.2 | 1.60E-24 | 1.83E-21 | 3 | |
| GO:0010033 | Response to organic substance | 2991 | 481 | 316.97 | 2.40E-24 | 2.20E-21 | 4 | |
| GO:0009751 | Response to salicylic acid | 358 | 103 | 37.94 | 5.70E-22 | 4.35E-19 | 5 | |
| GO:0006979 | Response to oxidative stress | 644 | 146 | 68.25 | 1.40E-19 | 9.16E-17 | 4 |