Table 3.
The top 15 most represented GO terms of up- and down-regulated genes for the R genome of F1 vs. R. sativus in the biological process category
| GO | Term | Anno-tated | Sig-nifi-cant | Expect-ed | Fisher | FDR | Level | |
|---|---|---|---|---|---|---|---|---|
| UP | GO:0080027 | Response to herbivore | 27 | 7 | 0.35 | 4.10E-08 | 0.000192 | 4 |
| GO:0005983 | Starch catabolic process | 29 | 7 | 0.38 | 7.10E-08 | 0.000192 | 7 | |
| GO:0005982 | Starch metabolic process | 94 | 10 | 1.22 | 4.10E-07 | 0.00074 | 7 | |
| GO:0009251 | Glucan catabolic process | 80 | 9 | 1.04 | 9.70E-07 | 0.001313 | 7 | |
| GO:0044247 | Cellular polysaccharide catabolic process | 87 | 9 | 1.13 | 2.00E-06 | 0.002166 | 6 | |
| GO:0010597 | Green leaf volatile biosynthetic process | 4 | 3 | 0.05 | 8.60E-06 | 0.006653 | 7 | |
| GO:0019372 | Lipoxygenase pathway | 4 | 3 | 0.05 | 8.60E-06 | 0.006653 | 6 | |
| GO:0005977 | Glycogen metabolic process | 25 | 5 | 0.32 | 1.50E-05 | 0.008664 | 5 | |
| GO:0006112 | Energy reserve metabolic process | 25 | 5 | 0.32 | 1.50E-05 | 0.008664 | 5 | |
| GO:0044275 | Cellular carbohydrate catabolic process | 112 | 9 | 1.45 | 1.60E-05 | 0.008664 | 5 | |
| GO:0006690 | Icosanoid metabolic process | 8 | 3 | 0.1 | 0.00012 | 0.05415 | 5 | |
| GO:1901568 | Fatty acid derivative metabolic process | 8 | 3 | 0.1 | 0.00012 | 0.05415 | 4 | |
| GO:0009607 | Response to biotic stimulus | 1752 | 41 | 22.74 | 0.00019 | 0.07581 | 3 | |
| GO:0043207 | Response to external biotic stimulus | 1704 | 40 | 22.12 | 0.00021 | 0.07581 | 4 | |
| GO:0051707 | Response to other organism | 1704 | 40 | 22.12 | 0.00021 | 0.07581 | 3 | |
| DOWN | GO:0015979 | Photosynthesis | 366 | 67 | 13.44 | 5.70E-28 | 3.09E-24 | 4 |
| GO:0009416 | Response to light stimulus | 1211 | 107 | 44.46 | 2.70E-17 | 7.31E-14 | 5 | |
| GO:0019684 | Photosynthesis, light reaction | 196 | 37 | 7.2 | 1.90E-16 | 3.43E-13 | 5 | |
| GO:0009314 | Response to radiation | 1257 | 107 | 46.15 | 3.60E-16 | 4.87E-13 | 4 | |
| GO:0009628 | Response to abiotic stimulus | 3421 | 213 | 125.6 | 1.60E-15 | 1.73E-12 | 3 | |
| GO:0006091 | Generation of precursor metabolites and energy | 524 | 59 | 19.24 | 2.30E-14 | 2.08E-11 | 4 | |
| GO:0055114 | Oxidation-reduction process | 2625 | 171 | 96.37 | 4.40E-14 | 3.40E-11 | 4 | |
| GO:0044711 | Single-organism biosynthetic process | 2955 | 186 | 108.49 | 6.40E-14 | 4.15E-11 | 4 | |
| GO:0050896 | Response to stimulus | 9671 | 465 | 355.06 | 6.90E-14 | 4.15E-11 | 2 | |
| GO:0042221 | Response to chemical | 4843 | 267 | 177.81 | 4.00E-13 | 2.17E-10 | 3 | |
| GO:0044550 | Secondary metabolite biosynthetic process | 489 | 54 | 17.95 | 6.50E-13 | 3.20E-10 | 5 | |
| GO:0019748 | Secondary metabolic process | 692 | 66 | 25.41 | 1.60E-12 | 7.22E-10 | 4 | |
| GO:0044710 | Single-organism metabolic process | 7483 | 372 | 274.73 | 2.90E-12 | 1.21E-09 | 3 | |
| GO:0009765 | Photosynthesis, light harvesting | 71 | 19 | 2.61 | 6.40E-12 | 2.48E-09 | 5 | |
| GO:0043436 | Oxoacid metabolic process | 2061 | 136 | 75.67 | 1.20E-11 | 4.33E-09 | 5 |