| Expressed genes |
22,068 |
19,353 |
22,822 |
42,351 |
27,045 |
22,858 |
156,497 |
| DEG total (%) |
6,843 (31.01) |
7,510 (38.81) |
10,496 (45.99) |
9,844 (23.24) |
8,069 (29.84) |
6,148 (26.90) |
48,910 |
| Upregulated genes |
3,012 |
3,545 |
4,692 |
4,402 |
3,513 |
2,867 |
22,031 |
| Downregulated genes |
3,831 |
3,965 |
5,804 |
5,442 |
4,556 |
3,281 |
26,879 |
| Up/down ratio |
0.79 |
0.89 |
0.81 |
0.81 |
0.77 |
0.87 |
0.82 |
| Mean reads per DEG (healthy) |
2,834.65 |
3,210.32 |
3,314.90 |
2,485.06 |
3,445.84 |
3,771.52 |
3,183.08 |
| Mean reads per DEG (inoculated) |
1,535.95 |
2,372.43 |
1,640.26 |
924.75 |
1,675.03 |
1,438.26 |
1,584.93 |
| Core orthologs total; [DEGs] |
10,307; [3,611] |
8,919; [3,604] |
10,551; [5,358] |
13,906; [3,825] |
10,206; [3,444] |
8,949; [2,879] |
62,838; [22,721] |
| Other orthologs total; [DEGs] |
5,693; [1,795] |
5,837; [2,327] |
5,224; [2,427] |
8,057; [2,168] |
5,668; [1,910] |
4,446; [1,357] |
34,925; [11,984] |
| Lineage-specific total; [DEGs] |
6,068; [1,437] |
4,597; [1,579] |
7,047; [2,711] |
20,388; [3,851] |
11,171; [2,715] |
9,463; [1,912] |
58,734; [14,205] |
| % of expressed genes with GO; Pfam |
59.36; 85.75 |
69.21; 89.45 |
74.13; 89.66 |
47.08; 76.12 |
48.47; 83.86 |
59.69; 80.49 |
73.96; 83.08 |
| No. with ≥3 occurrences GO; Pfam |
3,791; 4,284 |
2,410; 4,128 |
3,792; 4,862 |
3,059; 5,913 |
2,600; 4,969 |
2,381; 4,353 |
6,171; 13,100 |
| % of core genes with GO; Pfam |
88.36; 90.60 |
87.79; 96.56 |
97.71; 97.05 |
86.51; 96.89 |
80.73; 96.46 |
86.90; 96.56 |
87.99; 95.72 |
| No. of GOs enriched in up; downregulated genes |
156; 344 |
31; 28 |
54; 67 |
57; 56 |
55; 45 |
25; 42 |
262; 411 |
