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. 2020 Apr 21;215(2):463–482. doi: 10.1534/genetics.120.303191

Table 2. Plasmids used in this study.

Plasmid Description Reference Application
pZL1939 pRS416-PUF3-HA, expressing PUF3 with a C-terminal 3xHA tag under the control of the endogenous promoter. This study Figure 1, Figure 2C, Figure 3, Figure 4A, and Figure S1
pZL3340 pRS416-TEF2p-PUF3-HA, expressing PUF3 with a C-terminal 3xHA tag under the control of strong TEF2 promoter. This study Figure 2, A and B
pZL3338 pRS415-HRR25-myc, expressing HRR25 from the endogenous promoter with a 3xMyc epitope tag at the C-terminus. Collins et al. (2017) Figure 4A and Figure S1
pZL3542 pRS424-ADH1-GBD. Collins et al. (2017) Figure 4, B and C
pZL3557 pRS424-ADH1-GBD-HRR25. HRR25 ORF was cloned into the BamHI and SalI sites of pZL3542. Collins et al. (2017) Figure 4, B and C
pZL3740 pRS424-ADH1-GBD-HRR25(K38A). The kinase-dead mutant allele of HRR25, hrr25(K38A), was cloned into pZL3542. This study Figure 4B
pZL3736 pRS424-ADH1-GBD-HRR25(KD). The DNA sequence encoding the Hrr25 kinase domain was cloned into pZL3542. This study Figure 4C
pZL3744 pRS424-ADH1-GBD-HRR25ΔC. The DNA sequence encoding a C-terminal truncation construct of Hrr25 was cloned into pZL3542. This study Figure 4C
pZL3742 pRS424-ADH1-GBD-HRR25ΔM. The DNA sequence encoding a middle region truncation construct of Hrr25 was cloned into pZL3542. This study Figure 4C
pMB218 pRS424-ADH1-GBD-HRR25Μ. The DNA sequence encoding the middle region of Hrr25 was cloned into pZL3542. This study Figure S2
pMB220 pRS424-ADH1-GBD-HRR25C. The DNA sequence encoding the C-terminal region of Hrr25 was cloned into pZL3542. This study Figure S2
pZL3805 pRS424-ADH1-GBD-HRR25(M+C). The DNA sequence encoding the middle region and the C-terminal domain of Hrr25 was cloned into pZL3542. This study Figure S2
pZL3539 pRS415-TEF-GAD. This study Figure 4, B and C, and Figure S2
pMB212 pRS415-TEF-GAD-PUF3. The PUF3 ORF was cloned into the BamHI and XhoI sites of pZL3539. This study Figure 4B and Figure S2
pMB214 pRS415-TEF-GAD-PUF3N. A DNA sequence encoding the N-terminal domain (amino acid residues 1–533) of Puf3 was cloned into pZL3539. This study Figure 4, B and C, and Figure S2
pMB216 pRS415-TEF-GAD-PUF3C. A DNA sequence encoding the C-terminal domain (amino acid residues 511–879) of Puf3 was cloned into pZL3539. This study Figure 4, B and C, and Figure S2
pAB101 pET21a-HRR25ΔC, expressing a C-terminal truncation construct of Hrr25 with a C-terminal 6xHis tag. This study Figure 5, A and B
pAB104 pET21a-HRR25(K38A)ΔC, expressing a C-terminal truncation construct of Hrr25(K38A) with a C-terminal 6xHis tag. This study Figure 5A
pZL3359 pET24a-PUF3-HA, expressing Puf3 with a C-terminal 3xHA tag and a 6xHis tag. This study Figure 5, A and B
pZL3419 pET24a-PUF3N-HA, expressing the N-terminal domain of Puf3 with a C-terminal 3xHA tag and a 6xHis tag. This study Figure 5, A and B
pZL3421 pET24a-PUF3C-HA, expressing the C-terminal domain of Puf3 with a C-terminal 3xHA tag and a 6xHis tag. This study Figure 5, A and B
pZL1760 pET24a-MKS1, expressing Mks1 with a C-terminal His6 tag in E. coli. Liu et al. (2003) Figure 5C
pZL971 pET24a-RTG2, expressing Rtg2 with a C-terminal His6 tag in E. coli. The RTG2 ORF was cloned into the SacI and XhoI sites of pET24a. This study Figure 5C
pZL4262 pRS416-PUF3-HA, expressing PUF3 with a C-terminal 3xHA tag. The genomic DNA of CEN PAK background strain YL27 (wild-type PUF3) was used to amplify the PUF3 DNA fragment for cloning into a pRS416-HA plasmid. This study Figure 5D
pZL4264 pRS416-puf3 (24A)-HA, expressing puf3(24A) with a C-terminal 3xHA tag. The genomic DNA of the CEN PAK background strain YL27 (wild-type PUF3) was used to amplify the PUF3 DNA fragment for cloning into a pRS416-HA plasmid. This study Figure 5D
pZL4257 pET24a-PUF3-HA, expressing Puf3 with a C-terminal 3xHA tag and a 6xHis tag. The PUF3 coding sequence was amplified using yeast YL28 genomic DNA and cloned into pET24a. This study Figure 5E
pZL4258 pET24a-puf3 (24A)-HA, expressing a Puf3(24A) mutant with a C-terminal 3xHA tag and a 6xHis tag. The puf3(24A) coding sequence was amplified using yeast YL632 genomic DNA and cloned into pET24a. This study Figure 5E
pZL3507 pRS416-ADH1-GFP-CYC1ter, expressing GFP under the control of ADH1 promoter and the 3′-UTR of CYC1. This study Figure 6
pZL3407 pRS416-ADH1-GFP-CYT2ter This study Figure 6
pZL3510 pRS416-ADH1-GFP-CYT2ter (Puf3 site mutant) This study Figure 6
pZL3416 pRS416-ADH1-GFP-PET123ter This study Figure 6
pZL3512 pRS416-ADH1-GFP-PET123ter (Puf3 site 1 mutant) This study Figure 6
pZL3519 pRS416-ADH1-GFP-PET123ter (Puf3 site 1,2,3 triple mutant) This study Figure 6
pZL4248 pRS416-MKS1-GFP-CYC1ter, expressing GFP under the control of the MKS1 promoter and the 3′-UTR of CYC1. This study Figure S3
pZL4250 pRS416-MKS1-GFP-CYT2ter This study Figure S3
pZL4252 pRS416-MKS1-GFP-CYT2ter (Puf3 site mutant) This study Figure S3
pZL4253 pRS416-MKS1-GFP-PET123ter This study Figure S3
pZL4255 pRS416-MKS1-GFP-PET123ter (Puf3 site 1 mutant) This study Figure S3
pZL4256 pRS416-MKS1-GFP-PET123ter (Puf3 site 1,2,3 triple mutant) This study Figure S3